Hb_008226_030

Information

Type -
Description -
Location Contig8226: 16367-22183
Sequence    

Annotation

kegg
ID rcu:RCOM_0689750
description RING-H2 finger protein ATL3C, putative
nr
ID XP_002520866.1
description RING-H2 finger protein ATL3C, putative [Ricinus communis]
swissprot
ID Q9SG96
description RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1
trembl
ID B9S4E7
description RING-H2 finger protein ATL3C, putative OS=Ricinus communis GN=RCOM_0689750 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 039_A08.ab1: 22058-22817

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_030 0.0 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
2 Hb_001393_010 0.1216408763 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
3 Hb_003408_060 0.1328859195 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
4 Hb_005489_070 0.1430422539 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
5 Hb_007735_060 0.1470998216 - - PPase [Hevea brasiliensis]
6 Hb_001178_030 0.1534655336 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
7 Hb_000367_020 0.1589961752 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
8 Hb_012799_050 0.1657885526 - - PREDICTED: remorin [Jatropha curcas]
9 Hb_111552_010 0.1677845714 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
10 Hb_003687_130 0.1683170618 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
11 Hb_000809_020 0.1706583663 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_000806_030 0.1709924554 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
13 Hb_001279_040 0.1710022537 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
14 Hb_127311_010 0.1714804774 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
15 Hb_002817_060 0.1725648143 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
16 Hb_000340_080 0.1742011746 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
17 Hb_001541_070 0.1743041179 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
18 Hb_000347_300 0.1745059161 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
19 Hb_088584_010 0.1753569175 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
20 Hb_004204_010 0.1756951918 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]

Gene co-expression network

sample Hb_008226_030 Hb_008226_030 Hb_001393_010 Hb_001393_010 Hb_008226_030--Hb_001393_010 Hb_003408_060 Hb_003408_060 Hb_008226_030--Hb_003408_060 Hb_005489_070 Hb_005489_070 Hb_008226_030--Hb_005489_070 Hb_007735_060 Hb_007735_060 Hb_008226_030--Hb_007735_060 Hb_001178_030 Hb_001178_030 Hb_008226_030--Hb_001178_030 Hb_000367_020 Hb_000367_020 Hb_008226_030--Hb_000367_020 Hb_001393_010--Hb_001178_030 Hb_001279_040 Hb_001279_040 Hb_001393_010--Hb_001279_040 Hb_000806_030 Hb_000806_030 Hb_001393_010--Hb_000806_030 Hb_034585_010 Hb_034585_010 Hb_001393_010--Hb_034585_010 Hb_001393_010--Hb_000367_020 Hb_111552_010 Hb_111552_010 Hb_003408_060--Hb_111552_010 Hb_003687_130 Hb_003687_130 Hb_003408_060--Hb_003687_130 Hb_001766_070 Hb_001766_070 Hb_003408_060--Hb_001766_070 Hb_088584_010 Hb_088584_010 Hb_003408_060--Hb_088584_010 Hb_003177_070 Hb_003177_070 Hb_003408_060--Hb_003177_070 Hb_012799_050 Hb_012799_050 Hb_003408_060--Hb_012799_050 Hb_009658_030 Hb_009658_030 Hb_005489_070--Hb_009658_030 Hb_000270_120 Hb_000270_120 Hb_005489_070--Hb_000270_120 Hb_004204_010 Hb_004204_010 Hb_005489_070--Hb_004204_010 Hb_001541_070 Hb_001541_070 Hb_005489_070--Hb_001541_070 Hb_005977_070 Hb_005977_070 Hb_005489_070--Hb_005977_070 Hb_000170_130 Hb_000170_130 Hb_005489_070--Hb_000170_130 Hb_001801_020 Hb_001801_020 Hb_007735_060--Hb_001801_020 Hb_002817_060 Hb_002817_060 Hb_007735_060--Hb_002817_060 Hb_007735_060--Hb_000367_020 Hb_000484_010 Hb_000484_010 Hb_007735_060--Hb_000484_010 Hb_012053_090 Hb_012053_090 Hb_007735_060--Hb_012053_090 Hb_002235_200 Hb_002235_200 Hb_007735_060--Hb_002235_200 Hb_001178_030--Hb_111552_010 Hb_000586_020 Hb_000586_020 Hb_001178_030--Hb_000586_020 Hb_005305_130 Hb_005305_130 Hb_001178_030--Hb_005305_130 Hb_001178_030--Hb_000806_030 Hb_002249_030 Hb_002249_030 Hb_001178_030--Hb_002249_030 Hb_000404_030 Hb_000404_030 Hb_001178_030--Hb_000404_030 Hb_021596_010 Hb_021596_010 Hb_000367_020--Hb_021596_010 Hb_001951_100 Hb_001951_100 Hb_000367_020--Hb_001951_100 Hb_008686_020 Hb_008686_020 Hb_000367_020--Hb_008686_020 Hb_005649_080 Hb_005649_080 Hb_000367_020--Hb_005649_080 Hb_000154_130 Hb_000154_130 Hb_000367_020--Hb_000154_130 Hb_001054_120 Hb_001054_120 Hb_000367_020--Hb_001054_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.36097 6.37215 3.55281 4.20654 1.03142 1.26613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47228 0.320376 5.04637 1.96748 5.82532

CAGE analysis