Hb_005489_070

Information

Type -
Description -
Location Contig5489: 54557-59237
Sequence    

Annotation

kegg
ID zma:103632453
description transposon Tf2-1 polyprotein
nr
ID XP_008652480.1
description PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5BEK1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_070 0.0 - - PREDICTED: transposon Tf2-1 polyprotein isoform X1 [Zea mays]
2 Hb_009658_030 0.1168905456 - - PREDICTED: AP-5 complex subunit beta-1 [Jatropha curcas]
3 Hb_000270_120 0.1224604012 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
4 Hb_004204_010 0.1288752589 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
5 Hb_001541_070 0.1299413161 - - PREDICTED: protein-tyrosine-phosphatase MKP1-like [Jatropha curcas]
6 Hb_005977_070 0.1307642044 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
7 Hb_000170_130 0.1328371618 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
8 Hb_001723_100 0.1348901257 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
9 Hb_002157_080 0.1349561183 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
10 Hb_066920_030 0.1352583208 - - PREDICTED: adagio protein 1 [Jatropha curcas]
11 Hb_002686_090 0.1360423545 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
12 Hb_023344_160 0.1376734148 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
13 Hb_000656_390 0.138462426 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
14 Hb_000809_020 0.1413903075 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000103_390 0.1417652726 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
16 Hb_000465_280 0.1426635741 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
17 Hb_007234_010 0.1427360919 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
18 Hb_008226_030 0.1430422539 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
19 Hb_000484_010 0.1454892149 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 23 [Jatropha curcas]
20 Hb_004137_020 0.1457267041 - - PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005489_070 Hb_005489_070 Hb_009658_030 Hb_009658_030 Hb_005489_070--Hb_009658_030 Hb_000270_120 Hb_000270_120 Hb_005489_070--Hb_000270_120 Hb_004204_010 Hb_004204_010 Hb_005489_070--Hb_004204_010 Hb_001541_070 Hb_001541_070 Hb_005489_070--Hb_001541_070 Hb_005977_070 Hb_005977_070 Hb_005489_070--Hb_005977_070 Hb_000170_130 Hb_000170_130 Hb_005489_070--Hb_000170_130 Hb_009658_030--Hb_005977_070 Hb_002686_230 Hb_002686_230 Hb_009658_030--Hb_002686_230 Hb_002272_030 Hb_002272_030 Hb_009658_030--Hb_002272_030 Hb_066920_030 Hb_066920_030 Hb_009658_030--Hb_066920_030 Hb_004435_030 Hb_004435_030 Hb_009658_030--Hb_004435_030 Hb_002157_080 Hb_002157_080 Hb_009658_030--Hb_002157_080 Hb_000270_120--Hb_001541_070 Hb_000152_330 Hb_000152_330 Hb_000270_120--Hb_000152_330 Hb_001723_100 Hb_001723_100 Hb_000270_120--Hb_001723_100 Hb_000086_630 Hb_000086_630 Hb_000270_120--Hb_000086_630 Hb_000656_390 Hb_000656_390 Hb_000270_120--Hb_000656_390 Hb_002542_110 Hb_002542_110 Hb_000270_120--Hb_002542_110 Hb_004204_010--Hb_005977_070 Hb_001488_180 Hb_001488_180 Hb_004204_010--Hb_001488_180 Hb_005408_030 Hb_005408_030 Hb_004204_010--Hb_005408_030 Hb_004705_020 Hb_004705_020 Hb_004204_010--Hb_004705_020 Hb_004204_010--Hb_009658_030 Hb_011021_050 Hb_011021_050 Hb_004204_010--Hb_011021_050 Hb_001541_070--Hb_002542_110 Hb_000008_440 Hb_000008_440 Hb_001541_070--Hb_000008_440 Hb_001405_070 Hb_001405_070 Hb_001541_070--Hb_001405_070 Hb_001541_070--Hb_000086_630 Hb_007810_010 Hb_007810_010 Hb_001541_070--Hb_007810_010 Hb_023344_160 Hb_023344_160 Hb_005977_070--Hb_023344_160 Hb_005977_070--Hb_066920_030 Hb_005977_070--Hb_004705_020 Hb_000017_220 Hb_000017_220 Hb_005977_070--Hb_000017_220 Hb_011671_410 Hb_011671_410 Hb_000170_130--Hb_011671_410 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_002686_090 Hb_002686_090 Hb_000170_130--Hb_002686_090 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0180278 0.0559807 0.0257272 0.038609 0.00486547 0.0212184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0110151 0.017337 0.049936 0.0240353 0.0557165

CAGE analysis