Hb_000404_030

Information

Type -
Description -
Location Contig404: 69058-84579
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14890g
description POPTRDRAFT_662489; hypothetical protein
nr
ID XP_012065958.1
description PREDICTED: protein NAP1 [Jatropha curcas]
swissprot
ID Q5S2C4
description Protein NAP1 OS=Arabidopsis thaliana GN=NAP1 PE=1 SV=2
trembl
ID A0A067L412
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00095 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein nap1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40090: 68886-122916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000404_030 0.0 - - PREDICTED: protein NAP1 [Jatropha curcas]
2 Hb_000586_020 0.0559822674 desease resistance Gene Name: NB-ARC hypothetical protein F383_02497 [Gossypium arboreum]
3 Hb_002249_030 0.0692966805 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
4 Hb_002078_470 0.0789782312 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
5 Hb_001178_030 0.0859036109 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
6 Hb_009158_060 0.0864969565 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
7 Hb_013358_060 0.0892424384 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
8 Hb_000030_140 0.0907577827 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
9 Hb_004774_090 0.0930612438 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
10 Hb_003725_010 0.0948576081 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
11 Hb_005305_130 0.0964024274 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
12 Hb_005183_140 0.0973778091 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
13 Hb_002686_410 0.0975591074 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like isoform X2 [Jatropha curcas]
14 Hb_143629_020 0.0983347671 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
15 Hb_004551_020 0.1019147596 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
16 Hb_004586_090 0.103505445 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
17 Hb_006794_020 0.1035731003 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
18 Hb_111552_010 0.1039792012 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
19 Hb_160608_010 0.1044648739 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
20 Hb_068804_090 0.1047339116 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]

Gene co-expression network

sample Hb_000404_030 Hb_000404_030 Hb_000586_020 Hb_000586_020 Hb_000404_030--Hb_000586_020 Hb_002249_030 Hb_002249_030 Hb_000404_030--Hb_002249_030 Hb_002078_470 Hb_002078_470 Hb_000404_030--Hb_002078_470 Hb_001178_030 Hb_001178_030 Hb_000404_030--Hb_001178_030 Hb_009158_060 Hb_009158_060 Hb_000404_030--Hb_009158_060 Hb_013358_060 Hb_013358_060 Hb_000404_030--Hb_013358_060 Hb_000586_020--Hb_001178_030 Hb_004774_090 Hb_004774_090 Hb_000586_020--Hb_004774_090 Hb_111552_010 Hb_111552_010 Hb_000586_020--Hb_111552_010 Hb_000586_020--Hb_002249_030 Hb_068804_090 Hb_068804_090 Hb_000586_020--Hb_068804_090 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_002249_030--Hb_001178_030 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_000428_030 Hb_000428_030 Hb_002078_470--Hb_000428_030 Hb_002078_470--Hb_013358_060 Hb_003124_270 Hb_003124_270 Hb_002078_470--Hb_003124_270 Hb_004551_020 Hb_004551_020 Hb_002078_470--Hb_004551_020 Hb_143629_020 Hb_143629_020 Hb_002078_470--Hb_143629_020 Hb_004586_090 Hb_004586_090 Hb_002078_470--Hb_004586_090 Hb_001178_030--Hb_111552_010 Hb_005305_130 Hb_005305_130 Hb_001178_030--Hb_005305_130 Hb_000806_030 Hb_000806_030 Hb_001178_030--Hb_000806_030 Hb_009158_060--Hb_005305_130 Hb_160608_010 Hb_160608_010 Hb_009158_060--Hb_160608_010 Hb_003661_010 Hb_003661_010 Hb_009158_060--Hb_003661_010 Hb_000172_360 Hb_000172_360 Hb_009158_060--Hb_000172_360 Hb_000030_140 Hb_000030_140 Hb_009158_060--Hb_000030_140 Hb_008054_040 Hb_008054_040 Hb_009158_060--Hb_008054_040 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6796 43.555 41.8068 19.335 12.5616 11.4378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.4611 9.36849 14.2042 24.8441 46.5706

CAGE analysis