Hb_017098_060

Information

Type -
Description -
Location Contig17098: 47906-55497
Sequence    

Annotation

kegg
ID pxb:103943538
description LRR receptor-like serine/threonine-protein kinase GSO1
nr
ID XP_009352118.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Pyrus x bretschneideri]
swissprot
ID O49318
description Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1
trembl
ID B9RGT9
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1443940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15979: 52873-53148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017098_060 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Pyrus x bretschneideri]
2 Hb_000856_320 0.1966898284 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
3 Hb_000165_100 0.2099082294 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
4 Hb_029584_160 0.2135251339 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
5 Hb_026314_030 0.2175390376 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_005305_010 0.2248073295 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
7 Hb_004218_300 0.2249490943 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
8 Hb_002188_030 0.2255576846 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_033363_050 0.2290361511 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
10 Hb_011242_010 0.2299805058 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
11 Hb_004574_040 0.2306261941 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
12 Hb_019837_010 0.2332701276 - - conserved hypothetical protein [Ricinus communis]
13 Hb_020400_020 0.2353261722 - - starch synthase isoform II [Manihot esculenta]
14 Hb_003494_130 0.2375325329 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
15 Hb_000556_070 0.2379869328 - - PREDICTED: receptor-like serine/threonine-protein kinase At2g45590 [Jatropha curcas]
16 Hb_003688_140 0.2389890623 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
17 Hb_002909_080 0.2395124011 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
18 Hb_004109_130 0.2395444184 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
19 Hb_008165_050 0.2396497927 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_044653_070 0.2420625713 - - hypothetical protein CICLE_v10018540mg [Citrus clementina]

Gene co-expression network

sample Hb_017098_060 Hb_017098_060 Hb_000856_320 Hb_000856_320 Hb_017098_060--Hb_000856_320 Hb_000165_100 Hb_000165_100 Hb_017098_060--Hb_000165_100 Hb_029584_160 Hb_029584_160 Hb_017098_060--Hb_029584_160 Hb_026314_030 Hb_026314_030 Hb_017098_060--Hb_026314_030 Hb_005305_010 Hb_005305_010 Hb_017098_060--Hb_005305_010 Hb_004218_300 Hb_004218_300 Hb_017098_060--Hb_004218_300 Hb_141990_020 Hb_141990_020 Hb_000856_320--Hb_141990_020 Hb_000958_100 Hb_000958_100 Hb_000856_320--Hb_000958_100 Hb_002188_030 Hb_002188_030 Hb_000856_320--Hb_002188_030 Hb_005466_010 Hb_005466_010 Hb_000856_320--Hb_005466_010 Hb_003494_130 Hb_003494_130 Hb_000856_320--Hb_003494_130 Hb_000035_060 Hb_000035_060 Hb_000165_100--Hb_000035_060 Hb_002888_040 Hb_002888_040 Hb_000165_100--Hb_002888_040 Hb_001969_130 Hb_001969_130 Hb_000165_100--Hb_001969_130 Hb_000321_120 Hb_000321_120 Hb_000165_100--Hb_000321_120 Hb_026698_020 Hb_026698_020 Hb_000165_100--Hb_026698_020 Hb_000959_010 Hb_000959_010 Hb_000165_100--Hb_000959_010 Hb_029584_160--Hb_026698_020 Hb_001179_010 Hb_001179_010 Hb_029584_160--Hb_001179_010 Hb_029584_160--Hb_000035_060 Hb_000635_050 Hb_000635_050 Hb_029584_160--Hb_000635_050 Hb_000096_110 Hb_000096_110 Hb_029584_160--Hb_000096_110 Hb_005999_020 Hb_005999_020 Hb_029584_160--Hb_005999_020 Hb_011053_030 Hb_011053_030 Hb_026314_030--Hb_011053_030 Hb_000866_050 Hb_000866_050 Hb_026314_030--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_026314_030--Hb_000032_400 Hb_000834_080 Hb_000834_080 Hb_026314_030--Hb_000834_080 Hb_183963_010 Hb_183963_010 Hb_026314_030--Hb_183963_010 Hb_005305_020 Hb_005305_020 Hb_026314_030--Hb_005305_020 Hb_000834_060 Hb_000834_060 Hb_005305_010--Hb_000834_060 Hb_033363_050 Hb_033363_050 Hb_005305_010--Hb_033363_050 Hb_074109_010 Hb_074109_010 Hb_005305_010--Hb_074109_010 Hb_003688_140 Hb_003688_140 Hb_005305_010--Hb_003688_140 Hb_004357_060 Hb_004357_060 Hb_005305_010--Hb_004357_060 Hb_000002_300 Hb_000002_300 Hb_005305_010--Hb_000002_300 Hb_002073_110 Hb_002073_110 Hb_004218_300--Hb_002073_110 Hb_000638_100 Hb_000638_100 Hb_004218_300--Hb_000638_100 Hb_004724_260 Hb_004724_260 Hb_004218_300--Hb_004724_260 Hb_006915_010 Hb_006915_010 Hb_004218_300--Hb_006915_010 Hb_031330_020 Hb_031330_020 Hb_004218_300--Hb_031330_020 Hb_002014_070 Hb_002014_070 Hb_004218_300--Hb_002014_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0820619 0.0832964 0.0526408 0 0.013054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.012885 0.0491962 0.0204567 0.192014

CAGE analysis