Hb_033363_050

Information

Type -
Description -
Location Contig33363: 33160-41665
Sequence    

Annotation

kegg
ID rcu:RCOM_0705610
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_012082030.1
description PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
swissprot
ID Q9FZB8
description Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1
trembl
ID B9SEI9
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0705610 PE=4 SV=1
Gene Ontology
ID GO:0005768
description leucine-rich repeat receptor-like serine threonine-protein kinase at2g14440 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35008: 33284-43616 , PASA_asmbl_35010: 40604-41072
cDNA
(Sanger)
(ID:Location)		 006_G11.ab1: 33426-34305 , 038_N17.ab1: 33426-34338

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033363_050 0.0 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 isoform X2 [Jatropha curcas]
2 Hb_000115_360 0.1324560501 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
3 Hb_000665_200 0.1351377217 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_005695_080 0.1381295455 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
5 Hb_001865_010 0.1409793651 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
6 Hb_004223_270 0.1419221716 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
7 Hb_000005_100 0.1445935679 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
8 Hb_004041_030 0.1449151026 - - PREDICTED: mitochondrial substrate carrier family protein C-like isoform X1 [Populus euphratica]
9 Hb_000933_110 0.148101871 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
10 Hb_000334_050 0.1489415643 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
11 Hb_001054_070 0.1496947859 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
12 Hb_001969_130 0.1552877454 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
13 Hb_022425_050 0.1567790385 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
14 Hb_005305_010 0.1581781306 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
15 Hb_002391_320 0.1604183137 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
16 Hb_001221_300 0.1618691827 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
17 Hb_000260_160 0.1631247705 transcription factor TF Family: GNAT ATP binding protein, putative [Ricinus communis]
18 Hb_001865_100 0.1645830191 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
19 Hb_013968_010 0.1649747894 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
20 Hb_004545_120 0.1656441042 - - PREDICTED: uncharacterized protein LOC105647604 [Jatropha curcas]

Gene co-expression network

sample Hb_033363_050 Hb_033363_050 Hb_000115_360 Hb_000115_360 Hb_033363_050--Hb_000115_360 Hb_000665_200 Hb_000665_200 Hb_033363_050--Hb_000665_200 Hb_005695_080 Hb_005695_080 Hb_033363_050--Hb_005695_080 Hb_001865_010 Hb_001865_010 Hb_033363_050--Hb_001865_010 Hb_004223_270 Hb_004223_270 Hb_033363_050--Hb_004223_270 Hb_000005_100 Hb_000005_100 Hb_033363_050--Hb_000005_100 Hb_033152_110 Hb_033152_110 Hb_000115_360--Hb_033152_110 Hb_000622_060 Hb_000622_060 Hb_000115_360--Hb_000622_060 Hb_002391_320 Hb_002391_320 Hb_000115_360--Hb_002391_320 Hb_003226_200 Hb_003226_200 Hb_000115_360--Hb_003226_200 Hb_004129_010 Hb_004129_010 Hb_000115_360--Hb_004129_010 Hb_112064_010 Hb_112064_010 Hb_000115_360--Hb_112064_010 Hb_002026_030 Hb_002026_030 Hb_000665_200--Hb_002026_030 Hb_001865_100 Hb_001865_100 Hb_000665_200--Hb_001865_100 Hb_001969_130 Hb_001969_130 Hb_000665_200--Hb_001969_130 Hb_004052_110 Hb_004052_110 Hb_000665_200--Hb_004052_110 Hb_001221_300 Hb_001221_300 Hb_000665_200--Hb_001221_300 Hb_000066_040 Hb_000066_040 Hb_000665_200--Hb_000066_040 Hb_001080_030 Hb_001080_030 Hb_005695_080--Hb_001080_030 Hb_005695_080--Hb_001865_010 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_001425_010 Hb_001425_010 Hb_005695_080--Hb_001425_010 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010 Hb_022425_050 Hb_022425_050 Hb_001865_010--Hb_022425_050 Hb_001124_140 Hb_001124_140 Hb_001865_010--Hb_001124_140 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_001865_010--Hb_001969_130 Hb_001865_010--Hb_001425_010 Hb_004223_270--Hb_000005_100 Hb_000933_110 Hb_000933_110 Hb_004223_270--Hb_000933_110 Hb_000334_050 Hb_000334_050 Hb_004223_270--Hb_000334_050 Hb_004223_270--Hb_022425_050 Hb_001649_030 Hb_001649_030 Hb_004223_270--Hb_001649_030 Hb_005116_100 Hb_005116_100 Hb_004223_270--Hb_005116_100 Hb_000005_100--Hb_022425_050 Hb_003055_070 Hb_003055_070 Hb_000005_100--Hb_003055_070 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_007765_130 Hb_007765_130 Hb_000005_100--Hb_007765_130 Hb_001053_020 Hb_001053_020 Hb_000005_100--Hb_001053_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.470551 6.85129 9.15795 5.59078 1.05473 0.687102
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.429961 3.7014 1.90557 4.51555 14.5075

CAGE analysis