Hb_001865_010

Information

Type transcription factor
Description TF Family: B3
Location Contig1865: 5865-13760
Sequence    

Annotation

kegg
ID rcu:RCOM_0465210
description hypothetical protein
nr
ID XP_002528454.1
description hypothetical protein RCOM_0465210 [Ricinus communis]
swissprot
ID Q8L3W1
description B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1
trembl
ID B9SR35
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0465210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18410: 2723-7232 , PASA_asmbl_18411: 2754-7232 , PASA_asmbl_18412: 2781-7232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001865_010 0.0 transcription factor TF Family: B3 hypothetical protein RCOM_0465210 [Ricinus communis]
2 Hb_022425_050 0.0712447478 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
3 Hb_001124_140 0.1007642115 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
4 Hb_013968_010 0.1021959302 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
5 Hb_005695_080 0.1039496324 - - PREDICTED: acetyl-CoA carboxylase 1-like [Jatropha curcas]
6 Hb_001969_130 0.107225844 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
7 Hb_001425_010 0.1119004019 - - sugar transporter, putative [Ricinus communis]
8 Hb_000334_050 0.1164334887 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
9 Hb_005731_100 0.1177972587 - - monovalent cation:proton antiporter, putative [Ricinus communis]
10 Hb_004223_270 0.1194933094 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
11 Hb_000665_200 0.1196287913 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_004346_040 0.1236596427 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
13 Hb_002383_050 0.1244795329 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
14 Hb_000365_220 0.1274787529 - - protein phosphatase-1, putative [Ricinus communis]
15 Hb_025045_010 0.1280929811 - - catalytic, putative [Ricinus communis]
16 Hb_018043_020 0.1298448405 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
17 Hb_002811_190 0.1307738484 - - tRNA pseudouridine synthase d, putative [Ricinus communis]
18 Hb_000066_040 0.1324672819 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
19 Hb_000977_150 0.1330454968 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
20 Hb_000933_110 0.1340561739 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001865_010 Hb_001865_010 Hb_022425_050 Hb_022425_050 Hb_001865_010--Hb_022425_050 Hb_001124_140 Hb_001124_140 Hb_001865_010--Hb_001124_140 Hb_013968_010 Hb_013968_010 Hb_001865_010--Hb_013968_010 Hb_005695_080 Hb_005695_080 Hb_001865_010--Hb_005695_080 Hb_001969_130 Hb_001969_130 Hb_001865_010--Hb_001969_130 Hb_001425_010 Hb_001425_010 Hb_001865_010--Hb_001425_010 Hb_005731_100 Hb_005731_100 Hb_022425_050--Hb_005731_100 Hb_004223_270 Hb_004223_270 Hb_022425_050--Hb_004223_270 Hb_000334_050 Hb_000334_050 Hb_022425_050--Hb_000334_050 Hb_022425_050--Hb_001124_140 Hb_022425_050--Hb_001969_130 Hb_001124_140--Hb_005731_100 Hb_001124_140--Hb_001969_130 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010 Hb_001821_060 Hb_001821_060 Hb_013968_010--Hb_001821_060 Hb_011188_010 Hb_011188_010 Hb_013968_010--Hb_011188_010 Hb_002383_050 Hb_002383_050 Hb_013968_010--Hb_002383_050 Hb_003226_090 Hb_003226_090 Hb_013968_010--Hb_003226_090 Hb_001514_240 Hb_001514_240 Hb_013968_010--Hb_001514_240 Hb_004346_040 Hb_004346_040 Hb_013968_010--Hb_004346_040 Hb_001080_030 Hb_001080_030 Hb_005695_080--Hb_001080_030 Hb_000406_190 Hb_000406_190 Hb_005695_080--Hb_000406_190 Hb_005695_080--Hb_001425_010 Hb_005695_080--Hb_001969_130 Hb_052946_010 Hb_052946_010 Hb_005695_080--Hb_052946_010 Hb_000665_200 Hb_000665_200 Hb_001969_130--Hb_000665_200 Hb_001969_130--Hb_002026_030 Hb_000066_040 Hb_000066_040 Hb_001969_130--Hb_000066_040 Hb_001221_300 Hb_001221_300 Hb_001969_130--Hb_001221_300 Hb_018043_020 Hb_018043_020 Hb_001425_010--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_001425_010--Hb_008616_040 Hb_159809_090 Hb_159809_090 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.530279 4.1718 5.32085 2.77609 0.493205 0.459089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.923727 0.629975 0.787185 3.24453 8.65006

CAGE analysis