Hb_000002_300

Information

Type -
Description -
Location Contig2: 470056-472798
Sequence    

Annotation

kegg
ID rcu:RCOM_0491920
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_002529304.1
description Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
swissprot
ID Q84MB3
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1
trembl
ID B9STI5
description Desacetoxyvindoline 4-hydroxylase, putative OS=Ricinus communis GN=RCOM_0491920 PE=3 SV=1
Gene Ontology
ID GO:0005506
description 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20092: 469947-471435 , PASA_asmbl_20095: 473319-476149
cDNA
(Sanger)
(ID:Location)		 019_E04.ab1: 473618-476063

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000002_300 0.0 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
2 Hb_003141_060 0.0987981612 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
3 Hb_001541_280 0.1024431526 - - phosphate transporter [Manihot esculenta]
4 Hb_074548_010 0.1077196214 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_003605_060 0.1083258626 - - PREDICTED: ATP synthase subunit delta, chloroplastic [Jatropha curcas]
6 Hb_000948_120 0.1108707281 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
7 Hb_002636_030 0.1111075423 - - hypothetical protein JCGZ_11800 [Jatropha curcas]
8 Hb_010098_040 0.1113443602 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
9 Hb_000968_010 0.1120031576 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
10 Hb_020141_030 0.1129106542 - - solanesyl diphosphate synthase, putative [Ricinus communis]
11 Hb_000618_110 0.1151523675 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
12 Hb_000856_280 0.1153842763 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
13 Hb_000270_640 0.1157915518 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
14 Hb_000140_460 0.1169735152 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
15 Hb_000208_270 0.1196357516 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
16 Hb_000679_080 0.1212472315 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
17 Hb_000479_210 0.1225612491 - - PREDICTED: uncharacterized protein LOC105644126 [Jatropha curcas]
18 Hb_000127_100 0.1228105623 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
19 Hb_000723_320 0.1270843866 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
20 Hb_002811_250 0.1274673674 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000002_300 Hb_000002_300 Hb_003141_060 Hb_003141_060 Hb_000002_300--Hb_003141_060 Hb_001541_280 Hb_001541_280 Hb_000002_300--Hb_001541_280 Hb_074548_010 Hb_074548_010 Hb_000002_300--Hb_074548_010 Hb_003605_060 Hb_003605_060 Hb_000002_300--Hb_003605_060 Hb_000948_120 Hb_000948_120 Hb_000002_300--Hb_000948_120 Hb_002636_030 Hb_002636_030 Hb_000002_300--Hb_002636_030 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_001227_140 Hb_001227_140 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_003141_060--Hb_000948_120 Hb_000270_640 Hb_000270_640 Hb_001541_280--Hb_000270_640 Hb_000847_030 Hb_000847_030 Hb_001541_280--Hb_000847_030 Hb_002814_010 Hb_002814_010 Hb_001541_280--Hb_002814_010 Hb_020141_030 Hb_020141_030 Hb_001541_280--Hb_020141_030 Hb_000140_460 Hb_000140_460 Hb_001541_280--Hb_000140_460 Hb_074548_010--Hb_003605_060 Hb_002485_050 Hb_002485_050 Hb_074548_010--Hb_002485_050 Hb_005523_040 Hb_005523_040 Hb_074548_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_074548_010--Hb_000544_070 Hb_074548_010--Hb_002636_030 Hb_005977_040 Hb_005977_040 Hb_074548_010--Hb_005977_040 Hb_003605_060--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_003605_060--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_003605_060--Hb_009393_130 Hb_007803_040 Hb_007803_040 Hb_003605_060--Hb_007803_040 Hb_003605_060--Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_121089_010 Hb_121089_010 Hb_000948_120--Hb_121089_010 Hb_000948_120--Hb_001227_140 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_003680_060 Hb_003680_060 Hb_000948_120--Hb_003680_060 Hb_000948_120--Hb_000140_460 Hb_091433_050 Hb_091433_050 Hb_002636_030--Hb_091433_050 Hb_002636_030--Hb_000856_280 Hb_010098_040 Hb_010098_040 Hb_002636_030--Hb_010098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211759 3.71739 10.4109 6.02872 0.597512 0.183111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219166 0.545965 0.26842 1.88487 18.7605

CAGE analysis