Hb_011478_010

Information

Type -
Description -
Location Contig11478: 36522-41531
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011478_010 0.0 - - -
2 Hb_003711_030 0.0309326102 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
3 Hb_167183_010 0.1766926093 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_057451_040 0.1831727786 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000268_100 0.2073534196 - - -
6 Hb_002025_090 0.2274045082 - - unnamed protein product [Coffea canephora]
7 Hb_002122_020 0.260048603 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
8 Hb_002869_070 0.2692897577 - - -
9 Hb_006933_010 0.2758122577 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_004124_010 0.2762222906 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_004212_040 0.2764387991 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_143769_010 0.2829622059 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
13 Hb_019656_010 0.2896983953 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_154997_010 0.2903747129 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
15 Hb_106815_010 0.2916204766 - - hypothetical protein, conserved [Eimeria acervulina]
16 Hb_050334_010 0.2986411249 - - -
17 Hb_006157_050 0.2992136324 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000172_130 0.2994279736 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
19 Hb_171685_030 0.3004729684 - - URF-1 [Citrullus lanatus]
20 Hb_002473_140 0.3011981441 - - -

Gene co-expression network

sample Hb_011478_010 Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_011478_010--Hb_003711_030 Hb_167183_010 Hb_167183_010 Hb_011478_010--Hb_167183_010 Hb_057451_040 Hb_057451_040 Hb_011478_010--Hb_057451_040 Hb_000268_100 Hb_000268_100 Hb_011478_010--Hb_000268_100 Hb_002025_090 Hb_002025_090 Hb_011478_010--Hb_002025_090 Hb_002122_020 Hb_002122_020 Hb_011478_010--Hb_002122_020 Hb_003711_030--Hb_057451_040 Hb_003711_030--Hb_167183_010 Hb_003711_030--Hb_000268_100 Hb_003711_030--Hb_002025_090 Hb_003711_030--Hb_002122_020 Hb_141425_010 Hb_141425_010 Hb_167183_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_167183_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_167183_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_167183_010--Hb_009268_030 Hb_057451_040--Hb_000268_100 Hb_115656_010 Hb_115656_010 Hb_057451_040--Hb_115656_010 Hb_004212_040 Hb_004212_040 Hb_057451_040--Hb_004212_040 Hb_057451_040--Hb_002025_090 Hb_027357_010 Hb_027357_010 Hb_000268_100--Hb_027357_010 Hb_171685_040 Hb_171685_040 Hb_000268_100--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_000268_100--Hb_171685_030 Hb_002025_090--Hb_115656_010 Hb_002025_090--Hb_000268_100 Hb_030370_010 Hb_030370_010 Hb_002025_090--Hb_030370_010 Hb_088410_010 Hb_088410_010 Hb_002122_020--Hb_088410_010 Hb_033623_040 Hb_033623_040 Hb_002122_020--Hb_033623_040 Hb_002473_140 Hb_002473_140 Hb_002122_020--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002122_020--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_002122_020--Hb_065943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0125367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.023672 0.0049171 0.052799

CAGE analysis