Hb_000268_100

Information

Type -
Description -
Location Contig268: 119202-128166
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000268_100 0.0 - - -
2 Hb_057451_040 0.1791631562 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_011478_010 0.2073534196 - - -
4 Hb_027357_010 0.2179440075 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003711_030 0.21998976 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
6 Hb_171685_040 0.2204583603 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
7 Hb_171685_030 0.2267907551 - - URF-1 [Citrullus lanatus]
8 Hb_183191_020 0.2275857654 - - conserved hypothetical protein [Ricinus communis]
9 Hb_102602_030 0.2341923785 - - hypothetical protein (mitochondrion) [Vicia faba]
10 Hb_171685_020 0.2359780921 - - conserved hypothetical protein [Ricinus communis]
11 Hb_013420_040 0.2383975965 - - unnamed protein product [Vitis vinifera]
12 Hb_154997_010 0.2389864501 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
13 Hb_002495_050 0.2419878894 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
14 Hb_001124_170 0.2425627602 - - putative retrotransposon protein [Phyllostachys edulis]
15 Hb_006933_010 0.2496647115 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_002025_090 0.2497681903 - - unnamed protein product [Coffea canephora]
17 Hb_115656_010 0.2504863177 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
18 Hb_062192_060 0.2525115461 - - maturase (mitochondrion) [Hevea brasiliensis]
19 Hb_001450_010 0.253755941 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
20 Hb_002482_050 0.2543002578 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000268_100 Hb_000268_100 Hb_057451_040 Hb_057451_040 Hb_000268_100--Hb_057451_040 Hb_011478_010 Hb_011478_010 Hb_000268_100--Hb_011478_010 Hb_027357_010 Hb_027357_010 Hb_000268_100--Hb_027357_010 Hb_003711_030 Hb_003711_030 Hb_000268_100--Hb_003711_030 Hb_171685_040 Hb_171685_040 Hb_000268_100--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_000268_100--Hb_171685_030 Hb_057451_040--Hb_011478_010 Hb_057451_040--Hb_003711_030 Hb_115656_010 Hb_115656_010 Hb_057451_040--Hb_115656_010 Hb_004212_040 Hb_004212_040 Hb_057451_040--Hb_004212_040 Hb_002025_090 Hb_002025_090 Hb_057451_040--Hb_002025_090 Hb_011478_010--Hb_003711_030 Hb_167183_010 Hb_167183_010 Hb_011478_010--Hb_167183_010 Hb_011478_010--Hb_002025_090 Hb_002122_020 Hb_002122_020 Hb_011478_010--Hb_002122_020 Hb_013420_020 Hb_013420_020 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_027357_010--Hb_012163_050 Hb_041813_030 Hb_041813_030 Hb_027357_010--Hb_041813_030 Hb_027357_010--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_027357_010--Hb_013420_010 Hb_003711_030--Hb_167183_010 Hb_003711_030--Hb_002025_090 Hb_003711_030--Hb_002122_020 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_005742_010 Hb_005742_010 Hb_171685_040--Hb_005742_010 Hb_000159_020 Hb_000159_020 Hb_171685_030--Hb_000159_020 Hb_171685_030--Hb_102602_030 Hb_062192_060 Hb_062192_060 Hb_171685_030--Hb_062192_060 Hb_034455_010 Hb_034455_010 Hb_171685_030--Hb_034455_010 Hb_171685_030--Hb_171685_040 Hb_171685_030--Hb_005742_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0102596 0 0 0 0.0245069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0418743 0.0177158 0.233205

CAGE analysis