Hb_115656_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig115656: 19-2010
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01660g
description NBS-LRR resistance gene-like protein ARGH35
nr
ID XP_012069289.1
description PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
swissprot
ID Q6L400
description Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1
trembl
ID A0A067L127
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24942 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115656_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
2 Hb_057451_040 0.1962684098 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001282_030 0.2013007224 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
4 Hb_004212_040 0.2117310847 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_002025_090 0.2325788888 - - unnamed protein product [Coffea canephora]
6 Hb_012092_080 0.2392518368 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
7 Hb_142570_010 0.2401161602 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
8 Hb_012305_090 0.2473151866 - - hypothetical protein VITISV_018166 [Vitis vinifera]
9 Hb_000268_100 0.2504863177 - - -
10 Hb_043792_020 0.2547767705 - - Retrotransposon gag protein [Medicago truncatula]
11 Hb_001519_210 0.2584770447 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
12 Hb_041813_050 0.262019362 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
13 Hb_000920_070 0.2650871618 - - -
14 Hb_154726_010 0.2665951773 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
15 Hb_003406_030 0.2682746554 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
16 Hb_002729_020 0.272567971 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
17 Hb_086607_010 0.2788587969 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_001446_010 0.2796286111 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
19 Hb_087161_010 0.2798554925 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_003197_060 0.2814876951 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]

Gene co-expression network

sample Hb_115656_010 Hb_115656_010 Hb_057451_040 Hb_057451_040 Hb_115656_010--Hb_057451_040 Hb_001282_030 Hb_001282_030 Hb_115656_010--Hb_001282_030 Hb_004212_040 Hb_004212_040 Hb_115656_010--Hb_004212_040 Hb_002025_090 Hb_002025_090 Hb_115656_010--Hb_002025_090 Hb_012092_080 Hb_012092_080 Hb_115656_010--Hb_012092_080 Hb_142570_010 Hb_142570_010 Hb_115656_010--Hb_142570_010 Hb_000268_100 Hb_000268_100 Hb_057451_040--Hb_000268_100 Hb_011478_010 Hb_011478_010 Hb_057451_040--Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_057451_040--Hb_003711_030 Hb_057451_040--Hb_004212_040 Hb_057451_040--Hb_002025_090 Hb_001282_030--Hb_012092_080 Hb_086607_010 Hb_086607_010 Hb_001282_030--Hb_086607_010 Hb_001523_030 Hb_001523_030 Hb_001282_030--Hb_001523_030 Hb_001282_030--Hb_057451_040 Hb_001282_030--Hb_004212_040 Hb_032531_010 Hb_032531_010 Hb_004212_040--Hb_032531_010 Hb_050334_010 Hb_050334_010 Hb_004212_040--Hb_050334_010 Hb_000940_190 Hb_000940_190 Hb_004212_040--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_004212_040--Hb_099723_010 Hb_065943_010 Hb_065943_010 Hb_004212_040--Hb_065943_010 Hb_006157_050 Hb_006157_050 Hb_004212_040--Hb_006157_050 Hb_002025_090--Hb_003711_030 Hb_002025_090--Hb_011478_010 Hb_002025_090--Hb_000268_100 Hb_030370_010 Hb_030370_010 Hb_002025_090--Hb_030370_010 Hb_097021_010 Hb_097021_010 Hb_012092_080--Hb_097021_010 Hb_041813_050 Hb_041813_050 Hb_012092_080--Hb_041813_050 Hb_012092_080--Hb_001523_030 Hb_012463_010 Hb_012463_010 Hb_012092_080--Hb_012463_010 Hb_041813_010 Hb_041813_010 Hb_012092_080--Hb_041813_010 Hb_002473_140 Hb_002473_140 Hb_142570_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_142570_010--Hb_159938_010 Hb_142570_010--Hb_041813_050 Hb_001519_210 Hb_001519_210 Hb_142570_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_142570_010--Hb_088410_010 Hb_043792_020 Hb_043792_020 Hb_142570_010--Hb_043792_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0183956 0 0 0 0.010846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0376678 0.0555406 0.125903

CAGE analysis