Hb_043792_020

Information

Type -
Description -
Location Contig43792: 17404-18051
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G091900g
description hypothetical protein
nr
ID ABN08404.1
description Retrotransposon gag protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A2Q454
description Retrotransposon gag protein OS=Medicago truncatula GN=MtrDRAFT_AC155896g20v2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42552: 16560-17103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043792_020 0.0 - - Retrotransposon gag protein [Medicago truncatula]
2 Hb_001519_210 0.1109048889 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
3 Hb_159938_010 0.1220088083 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_005439_010 0.1526130296 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
5 Hb_154997_010 0.164126339 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
6 Hb_128531_010 0.1692407922 - - phosphoprotein phosphatase, putative [Ricinus communis]
7 Hb_050334_010 0.1759202542 - - -
8 Hb_002869_070 0.1853988481 - - -
9 Hb_002473_140 0.1998596524 - - -
10 Hb_142570_010 0.2132914722 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
11 Hb_095835_010 0.2153948628 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
12 Hb_155556_010 0.2171966035 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
13 Hb_006933_010 0.2225369691 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_012295_020 0.2407770647 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
15 Hb_032531_010 0.243150302 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_012071_010 0.2434688556 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
17 Hb_000307_230 0.2470809244 - - -
18 Hb_002495_050 0.2478710101 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
19 Hb_000920_070 0.2496014804 - - -
20 Hb_001124_170 0.2500288686 - - putative retrotransposon protein [Phyllostachys edulis]

Gene co-expression network

sample Hb_043792_020 Hb_043792_020 Hb_001519_210 Hb_001519_210 Hb_043792_020--Hb_001519_210 Hb_159938_010 Hb_159938_010 Hb_043792_020--Hb_159938_010 Hb_005439_010 Hb_005439_010 Hb_043792_020--Hb_005439_010 Hb_154997_010 Hb_154997_010 Hb_043792_020--Hb_154997_010 Hb_128531_010 Hb_128531_010 Hb_043792_020--Hb_128531_010 Hb_050334_010 Hb_050334_010 Hb_043792_020--Hb_050334_010 Hb_001519_210--Hb_050334_010 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_032531_010 Hb_032531_010 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_002869_070 Hb_002869_070 Hb_001519_210--Hb_002869_070 Hb_002473_140 Hb_002473_140 Hb_159938_010--Hb_002473_140 Hb_159938_010--Hb_154997_010 Hb_159938_010--Hb_002869_070 Hb_159938_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_159938_010--Hb_088410_010 Hb_005439_010--Hb_001519_210 Hb_005439_010--Hb_128531_010 Hb_005439_010--Hb_159938_010 Hb_095835_010 Hb_095835_010 Hb_005439_010--Hb_095835_010 Hb_155556_010 Hb_155556_010 Hb_005439_010--Hb_155556_010 Hb_006933_010 Hb_006933_010 Hb_154997_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_154997_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_154997_010--Hb_001124_170 Hb_154997_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_154997_010--Hb_004124_010 Hb_128531_010--Hb_095835_010 Hb_128531_010--Hb_159938_010 Hb_057638_010 Hb_057638_010 Hb_128531_010--Hb_057638_010 Hb_004129_180 Hb_004129_180 Hb_128531_010--Hb_004129_180 Hb_050334_010--Hb_032531_010 Hb_000940_190 Hb_000940_190 Hb_050334_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_050334_010--Hb_099723_010 Hb_050334_010--Hb_002869_070 Hb_065943_010 Hb_065943_010 Hb_050334_010--Hb_065943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.164033 0.237467 0.724766

CAGE analysis