Hb_002527_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2527: 26710-29541
Sequence    

Annotation

kegg
ID rcu:RCOM_1333060
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_002521805.1
description leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9S736
description Leucine-rich repeat-containing protein 2, lrrc2, putative OS=Ricinus communis GN=RCOM_1333060 PE=4 SV=1
Gene Ontology
ID GO:0004721
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26440: 26424-26893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002527_040 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
2 Hb_000086_390 0.1211935276 - - PREDICTED: uncharacterized protein LOC105644503 [Jatropha curcas]
3 Hb_002780_030 0.1522739179 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
4 Hb_001916_150 0.153176499 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
5 Hb_026314_030 0.1587071931 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
6 Hb_000032_400 0.1614434219 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
7 Hb_008179_010 0.1689986843 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
8 Hb_003778_020 0.1718289504 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_003494_130 0.172546722 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]
10 Hb_063866_010 0.1755694702 - - PREDICTED: uncharacterized protein LOC105632605 [Jatropha curcas]
11 Hb_002783_150 0.1767493309 - - cyclophilin [Hevea brasiliensis]
12 Hb_000008_060 0.1780509537 - - protein binding protein, putative [Ricinus communis]
13 Hb_000834_080 0.1803263981 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
14 Hb_002475_140 0.1815232344 - - PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
15 Hb_002010_110 0.1821814648 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
16 Hb_011053_030 0.1822371358 - - -
17 Hb_000538_300 0.1854858081 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
18 Hb_004672_020 0.1857121953 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
19 Hb_003226_200 0.1873439352 - - magnesium/proton exchanger, putative [Ricinus communis]
20 Hb_183963_010 0.1882619687 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_002527_040 Hb_002527_040 Hb_000086_390 Hb_000086_390 Hb_002527_040--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_002527_040--Hb_002780_030 Hb_001916_150 Hb_001916_150 Hb_002527_040--Hb_001916_150 Hb_026314_030 Hb_026314_030 Hb_002527_040--Hb_026314_030 Hb_000032_400 Hb_000032_400 Hb_002527_040--Hb_000032_400 Hb_008179_010 Hb_008179_010 Hb_002527_040--Hb_008179_010 Hb_000086_390--Hb_008179_010 Hb_011310_180 Hb_011310_180 Hb_000086_390--Hb_011310_180 Hb_000086_390--Hb_002780_030 Hb_002475_140 Hb_002475_140 Hb_000086_390--Hb_002475_140 Hb_020378_060 Hb_020378_060 Hb_000086_390--Hb_020378_060 Hb_004672_020 Hb_004672_020 Hb_002780_030--Hb_004672_020 Hb_005305_020 Hb_005305_020 Hb_002780_030--Hb_005305_020 Hb_002780_030--Hb_002475_140 Hb_002780_030--Hb_008179_010 Hb_003783_050 Hb_003783_050 Hb_001916_150--Hb_003783_050 Hb_003778_020 Hb_003778_020 Hb_001916_150--Hb_003778_020 Hb_000300_680 Hb_000300_680 Hb_001916_150--Hb_000300_680 Hb_003226_250 Hb_003226_250 Hb_001916_150--Hb_003226_250 Hb_030312_030 Hb_030312_030 Hb_001916_150--Hb_030312_030 Hb_114917_010 Hb_114917_010 Hb_001916_150--Hb_114917_010 Hb_011053_030 Hb_011053_030 Hb_026314_030--Hb_011053_030 Hb_000866_050 Hb_000866_050 Hb_026314_030--Hb_000866_050 Hb_026314_030--Hb_000032_400 Hb_000834_080 Hb_000834_080 Hb_026314_030--Hb_000834_080 Hb_183963_010 Hb_183963_010 Hb_026314_030--Hb_183963_010 Hb_026314_030--Hb_005305_020 Hb_000032_400--Hb_011053_030 Hb_000189_520 Hb_000189_520 Hb_000032_400--Hb_000189_520 Hb_003941_030 Hb_003941_030 Hb_000032_400--Hb_003941_030 Hb_000684_280 Hb_000684_280 Hb_000032_400--Hb_000684_280 Hb_000175_050 Hb_000175_050 Hb_000032_400--Hb_000175_050 Hb_001269_070 Hb_001269_070 Hb_008179_010--Hb_001269_070 Hb_008179_010--Hb_002475_140 Hb_000388_060 Hb_000388_060 Hb_008179_010--Hb_000388_060 Hb_008179_010--Hb_020378_060 Hb_003935_080 Hb_003935_080 Hb_008179_010--Hb_003935_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0612729 1.1576 0.643437 1.9356 0.0336296 0.0594813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.447824 0.65619 0.487653 0.491782 3.78111

CAGE analysis