Hb_001894_100

Information

Type -
Description -
Location Contig1894: 104047-104469
Sequence    

Annotation

kegg
ID rcu:RCOM_0528080
description hypothetical protein
nr
ID XP_012085391.1
description PREDICTED: kininogen-1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17751 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18813: 104254-104476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_100 0.0 - - PREDICTED: kininogen-1-like [Jatropha curcas]
2 Hb_001790_060 0.052002759 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
3 Hb_005348_050 0.0630783956 - - beta-galactosidase, putative [Ricinus communis]
4 Hb_008253_050 0.0742711772 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
5 Hb_000223_090 0.0754660006 - - Blue copper protein precursor, putative [Ricinus communis]
6 Hb_133076_010 0.0838524748 - - PREDICTED: scopoletin glucosyltransferase-like [Populus euphratica]
7 Hb_003151_020 0.0869336232 - - Ankyrin repeat family protein, putative [Theobroma cacao]
8 Hb_011618_010 0.0881310495 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
9 Hb_000477_090 0.0889657294 - - PREDICTED: uncharacterized protein LOC105639302 [Jatropha curcas]
10 Hb_008195_090 0.0959773398 - - conserved hypothetical protein [Ricinus communis]
11 Hb_041139_010 0.0974399274 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
12 Hb_000696_060 0.0975008228 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000139_360 0.097561425 - - PREDICTED: uncharacterized protein LOC105631933 [Jatropha curcas]
14 Hb_002073_130 0.1061633087 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
15 Hb_005539_150 0.1064697656 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
16 Hb_000268_050 0.1071785147 - - PREDICTED: tetrapyrrole-binding protein, chloroplastic [Jatropha curcas]
17 Hb_065774_010 0.1078341497 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-3, chloroplastic [Jatropha curcas]
18 Hb_006573_240 0.1094967933 - - PREDICTED: anthocyanidin 5,3-O-glucosyltransferase-like [Jatropha curcas]
19 Hb_002391_340 0.1101499383 - - RNA polymerase II largest subunit [Liriodendron tulipifera]
20 Hb_003528_100 0.110419404 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001894_100 Hb_001894_100 Hb_001790_060 Hb_001790_060 Hb_001894_100--Hb_001790_060 Hb_005348_050 Hb_005348_050 Hb_001894_100--Hb_005348_050 Hb_008253_050 Hb_008253_050 Hb_001894_100--Hb_008253_050 Hb_000223_090 Hb_000223_090 Hb_001894_100--Hb_000223_090 Hb_133076_010 Hb_133076_010 Hb_001894_100--Hb_133076_010 Hb_003151_020 Hb_003151_020 Hb_001894_100--Hb_003151_020 Hb_001790_060--Hb_133076_010 Hb_000268_050 Hb_000268_050 Hb_001790_060--Hb_000268_050 Hb_003528_100 Hb_003528_100 Hb_001790_060--Hb_003528_100 Hb_001790_060--Hb_000223_090 Hb_001790_060--Hb_005348_050 Hb_005348_050--Hb_000223_090 Hb_011618_010 Hb_011618_010 Hb_005348_050--Hb_011618_010 Hb_002659_050 Hb_002659_050 Hb_005348_050--Hb_002659_050 Hb_005348_050--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_008253_050--Hb_041139_010 Hb_008253_050--Hb_011618_010 Hb_008253_050--Hb_000223_090 Hb_005539_150 Hb_005539_150 Hb_008253_050--Hb_005539_150 Hb_029386_010 Hb_029386_010 Hb_000223_090--Hb_029386_010 Hb_000223_090--Hb_133076_010 Hb_000540_080 Hb_000540_080 Hb_133076_010--Hb_000540_080 Hb_000363_070 Hb_000363_070 Hb_133076_010--Hb_000363_070 Hb_045260_010 Hb_045260_010 Hb_133076_010--Hb_045260_010 Hb_133076_010--Hb_000268_050 Hb_001232_070 Hb_001232_070 Hb_003151_020--Hb_001232_070 Hb_002391_340 Hb_002391_340 Hb_003151_020--Hb_002391_340 Hb_001472_150 Hb_001472_150 Hb_003151_020--Hb_001472_150 Hb_008195_090 Hb_008195_090 Hb_003151_020--Hb_008195_090 Hb_006483_040 Hb_006483_040 Hb_003151_020--Hb_006483_040 Hb_000329_120 Hb_000329_120 Hb_003151_020--Hb_000329_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.30209 1.85343 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.179365 4.5389

CAGE analysis