Hb_131102_010

Information

Type -
Description -
Location Contig131102: 1762-4502
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_131102_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_133820_010 0.1724295362 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_131872_010 0.2024094154 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_019656_010 0.210044353 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_043708_010 0.2120793664 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
6 Hb_001450_010 0.2279788774 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
7 Hb_004650_060 0.2355566744 - - putative retrotransposon protein [Phyllostachys edulis]
8 Hb_007054_050 0.2500817923 - - -
9 Hb_183191_020 0.2602558977 - - conserved hypothetical protein [Ricinus communis]
10 Hb_123046_010 0.2645669073 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
11 Hb_000154_010 0.2694398466 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_010977_010 0.2729223803 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002534_030 0.2803123311 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
14 Hb_002888_020 0.2806391035 - - -
15 Hb_006132_030 0.282114833 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
16 Hb_001172_090 0.2832953898 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_154726_010 0.2869577423 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
18 Hb_013420_040 0.2878032219 - - unnamed protein product [Vitis vinifera]
19 Hb_004987_030 0.2883019917 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
20 Hb_003944_020 0.2902656448 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]

Gene co-expression network

sample Hb_131102_010 Hb_131102_010 Hb_133820_010 Hb_133820_010 Hb_131102_010--Hb_133820_010 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_019656_010 Hb_019656_010 Hb_131102_010--Hb_019656_010 Hb_043708_010 Hb_043708_010 Hb_131102_010--Hb_043708_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_004650_060 Hb_004650_060 Hb_131102_010--Hb_004650_060 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_000154_010 Hb_000154_010 Hb_133820_010--Hb_000154_010 Hb_006132_030 Hb_006132_030 Hb_133820_010--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_001341_020 Hb_001341_020 Hb_131872_010--Hb_001341_020 Hb_002226_050 Hb_002226_050 Hb_131872_010--Hb_002226_050 Hb_007054_050 Hb_007054_050 Hb_131872_010--Hb_007054_050 Hb_062671_010 Hb_062671_010 Hb_131872_010--Hb_062671_010 Hb_003944_020 Hb_003944_020 Hb_131872_010--Hb_003944_020 Hb_019656_010--Hb_043708_010 Hb_001172_090 Hb_001172_090 Hb_019656_010--Hb_001172_090 Hb_019656_010--Hb_004650_060 Hb_000258_340 Hb_000258_340 Hb_019656_010--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_019656_010--Hb_010977_010 Hb_043708_010--Hb_004650_060 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_154726_010 Hb_154726_010 Hb_001450_010--Hb_154726_010 Hb_000614_270 Hb_000614_270 Hb_001450_010--Hb_000614_270 Hb_000011_470 Hb_000011_470 Hb_001450_010--Hb_000011_470 Hb_001158_010 Hb_001158_010 Hb_001450_010--Hb_001158_010 Hb_183191_020 Hb_183191_020 Hb_001450_010--Hb_183191_020 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00958184 0.0140359 0 0 0 0.0145459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0175616 0.0138191 0.0263473 0.0164621 0.146889

CAGE analysis