Hb_010977_010

Information

Type -
Description -
Location Contig10977: 3612-7863
Sequence    

Annotation

kegg
ID tcc:TCM_033345
description DNA/RNA polymerases superfamily protein
nr
ID XP_007022574.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P10401
description Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061FHZ8
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_033345 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010977_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_001172_090 0.1969961803 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
3 Hb_086077_020 0.2408175499 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
4 Hb_004650_060 0.2484881073 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_019656_010 0.2628033463 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_004440_080 0.2713616093 - - PREDICTED: syntaxin-112 [Populus euphratica]
7 Hb_133820_010 0.2718113386 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_131102_010 0.2729223803 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_005344_030 0.281596518 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
10 Hb_094900_010 0.2847059826 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_043708_010 0.2919102978 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
12 Hb_000258_340 0.2961867505 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
13 Hb_002888_020 0.2966407349 - - -
14 Hb_162633_010 0.2967125358 - - hypothetical protein POPTR_0011s02600g [Populus trichocarpa]
15 Hb_002534_030 0.3003832254 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
16 Hb_000460_070 0.3027728803 - - luminal binding protein [Gossypium hirsutum]
17 Hb_000837_010 0.3035678915 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
18 Hb_005588_110 0.3036214238 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
19 Hb_001369_700 0.3066245939 - - -
20 Hb_003952_050 0.3083162183 - - beta-galactosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010977_010 Hb_010977_010 Hb_001172_090 Hb_001172_090 Hb_010977_010--Hb_001172_090 Hb_086077_020 Hb_086077_020 Hb_010977_010--Hb_086077_020 Hb_004650_060 Hb_004650_060 Hb_010977_010--Hb_004650_060 Hb_019656_010 Hb_019656_010 Hb_010977_010--Hb_019656_010 Hb_004440_080 Hb_004440_080 Hb_010977_010--Hb_004440_080 Hb_133820_010 Hb_133820_010 Hb_010977_010--Hb_133820_010 Hb_162633_010 Hb_162633_010 Hb_001172_090--Hb_162633_010 Hb_001172_090--Hb_019656_010 Hb_000258_340 Hb_000258_340 Hb_001172_090--Hb_000258_340 Hb_001172_090--Hb_086077_020 Hb_131102_010 Hb_131102_010 Hb_001172_090--Hb_131102_010 Hb_086077_020--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_086077_020--Hb_000012_460 Hb_086077_020--Hb_000258_340 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_086077_020--Hb_133820_010 Hb_043708_010 Hb_043708_010 Hb_004650_060--Hb_043708_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_000154_010 Hb_000154_010 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_019656_010--Hb_043708_010 Hb_019656_010--Hb_131102_010 Hb_019656_010--Hb_004650_060 Hb_019656_010--Hb_000258_340 Hb_004440_080--Hb_000012_460 Hb_004440_080--Hb_000258_340 Hb_002888_020 Hb_002888_020 Hb_004440_080--Hb_002888_020 Hb_002602_020 Hb_002602_020 Hb_004440_080--Hb_002602_020 Hb_133820_010--Hb_131102_010 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_133820_010--Hb_000154_010 Hb_006132_030 Hb_006132_030 Hb_133820_010--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_133820_010--Hb_011484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00603376 0 0 0.010029 0 0.0172395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0442401 0.00870386 0.0334247 0.00689534 0.130528

CAGE analysis