Hb_004440_080

Information

Type -
Description -
Location Contig4440: 90171-91018
Sequence    

Annotation

kegg
ID pop:POPTR_0007s13070g
description POPTRDRAFT_219297; hypothetical protein
nr
ID XP_011025820.1
description PREDICTED: syntaxin-112 [Populus euphratica]
swissprot
ID Q9ZPV9
description Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2
trembl
ID B9HF23
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s13070g PE=3 SV=2
Gene Ontology
ID GO:0005622
description syntaxin-112

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004440_080 0.0 - - PREDICTED: syntaxin-112 [Populus euphratica]
2 Hb_086077_020 0.1143290507 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
3 Hb_000012_460 0.2372446917 - - unknown [Populus trichocarpa]
4 Hb_000258_340 0.2460138134 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
5 Hb_002888_020 0.2607260683 - - -
6 Hb_002602_020 0.2685244427 - - -
7 Hb_010977_010 0.2713616093 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_007426_160 0.2790174655 - - -
9 Hb_004650_060 0.288443886 - - putative retrotransposon protein [Phyllostachys edulis]
10 Hb_133820_010 0.290244827 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_000932_100 0.2974860433 - - -
12 Hb_001172_090 0.2994917945 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_000772_040 0.3003147572 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
14 Hb_007276_020 0.3082430687 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_131102_010 0.3126396883 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_001952_040 0.3212782774 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000154_010 0.3239687408 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_006132_030 0.3244752383 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
19 Hb_019656_010 0.3268151569 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000052_020 0.3270053951 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004440_080 Hb_004440_080 Hb_086077_020 Hb_086077_020 Hb_004440_080--Hb_086077_020 Hb_000012_460 Hb_000012_460 Hb_004440_080--Hb_000012_460 Hb_000258_340 Hb_000258_340 Hb_004440_080--Hb_000258_340 Hb_002888_020 Hb_002888_020 Hb_004440_080--Hb_002888_020 Hb_002602_020 Hb_002602_020 Hb_004440_080--Hb_002602_020 Hb_010977_010 Hb_010977_010 Hb_004440_080--Hb_010977_010 Hb_086077_020--Hb_000012_460 Hb_086077_020--Hb_000258_340 Hb_086077_020--Hb_010977_010 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040 Hb_133820_010 Hb_133820_010 Hb_086077_020--Hb_133820_010 Hb_007426_160 Hb_007426_160 Hb_000012_460--Hb_007426_160 Hb_000012_460--Hb_000772_040 Hb_000932_100 Hb_000932_100 Hb_000012_460--Hb_000932_100 Hb_001006_260 Hb_001006_260 Hb_000012_460--Hb_001006_260 Hb_004448_020 Hb_004448_020 Hb_000012_460--Hb_004448_020 Hb_001172_090 Hb_001172_090 Hb_000258_340--Hb_001172_090 Hb_019656_010 Hb_019656_010 Hb_000258_340--Hb_019656_010 Hb_005372_020 Hb_005372_020 Hb_000258_340--Hb_005372_020 Hb_000258_340--Hb_010977_010 Hb_002243_070 Hb_002243_070 Hb_002888_020--Hb_002243_070 Hb_039262_010 Hb_039262_010 Hb_002888_020--Hb_039262_010 Hb_002874_040 Hb_002874_040 Hb_002888_020--Hb_002874_040 Hb_002888_020--Hb_086077_020 Hb_000012_160 Hb_000012_160 Hb_002888_020--Hb_000012_160 Hb_007276_020 Hb_007276_020 Hb_002602_020--Hb_007276_020 Hb_002304_020 Hb_002304_020 Hb_002602_020--Hb_002304_020 Hb_000982_110 Hb_000982_110 Hb_002602_020--Hb_000982_110 Hb_000062_140 Hb_000062_140 Hb_002602_020--Hb_000062_140 Hb_003663_060 Hb_003663_060 Hb_002602_020--Hb_003663_060 Hb_002188_120 Hb_002188_120 Hb_002602_020--Hb_002188_120 Hb_010977_010--Hb_001172_090 Hb_004650_060 Hb_004650_060 Hb_010977_010--Hb_004650_060 Hb_010977_010--Hb_019656_010 Hb_010977_010--Hb_133820_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0664041 0 0 0 0.0276021 0.204463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135422 0.0532408 0.0962848 0.0215517 0.42739

CAGE analysis