Hb_002874_040

Information

Type -
Description -
Location Contig2874: 25317-29675
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002874_040 0.0 - - -
2 Hb_000052_020 0.2267042678 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
3 Hb_002918_050 0.2335421549 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
4 Hb_002888_020 0.2474471686 - - -
5 Hb_003734_110 0.2614662351 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]
6 Hb_007426_160 0.2742539442 - - -
7 Hb_000012_160 0.278027029 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
8 Hb_003057_010 0.2822153209 - - hypothetical protein JCGZ_06666 [Jatropha curcas]
9 Hb_007747_210 0.2873811446 - - unnamed protein product [Vitis vinifera]
10 Hb_050953_010 0.2892989208 - - PREDICTED: uncharacterized protein LOC105779031 [Gossypium raimondii]
11 Hb_002304_070 0.292111928 - - -
12 Hb_159036_010 0.2929359711 - - -
13 Hb_044387_010 0.294955856 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
14 Hb_000160_320 0.3000479474 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
15 Hb_028751_020 0.3011547401 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
16 Hb_001595_080 0.3039656113 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000631_070 0.3041944966 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
18 Hb_039262_010 0.3071272258 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_042202_050 0.3085910552 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
20 Hb_049717_010 0.3094981801 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]

Gene co-expression network

sample Hb_002874_040 Hb_002874_040 Hb_000052_020 Hb_000052_020 Hb_002874_040--Hb_000052_020 Hb_002918_050 Hb_002918_050 Hb_002874_040--Hb_002918_050 Hb_002888_020 Hb_002888_020 Hb_002874_040--Hb_002888_020 Hb_003734_110 Hb_003734_110 Hb_002874_040--Hb_003734_110 Hb_007426_160 Hb_007426_160 Hb_002874_040--Hb_007426_160 Hb_000012_160 Hb_000012_160 Hb_002874_040--Hb_000012_160 Hb_000052_020--Hb_002918_050 Hb_000052_020--Hb_003734_110 Hb_042202_050 Hb_042202_050 Hb_000052_020--Hb_042202_050 Hb_007747_210 Hb_007747_210 Hb_000052_020--Hb_007747_210 Hb_001284_010 Hb_001284_010 Hb_000052_020--Hb_001284_010 Hb_000997_360 Hb_000997_360 Hb_000052_020--Hb_000997_360 Hb_002918_050--Hb_000997_360 Hb_002918_050--Hb_003734_110 Hb_000125_210 Hb_000125_210 Hb_002918_050--Hb_000125_210 Hb_002918_050--Hb_007747_210 Hb_042202_030 Hb_042202_030 Hb_002918_050--Hb_042202_030 Hb_002243_070 Hb_002243_070 Hb_002888_020--Hb_002243_070 Hb_039262_010 Hb_039262_010 Hb_002888_020--Hb_039262_010 Hb_004440_080 Hb_004440_080 Hb_002888_020--Hb_004440_080 Hb_086077_020 Hb_086077_020 Hb_002888_020--Hb_086077_020 Hb_002888_020--Hb_000012_160 Hb_003734_110--Hb_007747_210 Hb_001439_060 Hb_001439_060 Hb_003734_110--Hb_001439_060 Hb_011386_020 Hb_011386_020 Hb_003734_110--Hb_011386_020 Hb_000289_110 Hb_000289_110 Hb_003734_110--Hb_000289_110 Hb_001951_180 Hb_001951_180 Hb_003734_110--Hb_001951_180 Hb_000012_460 Hb_000012_460 Hb_007426_160--Hb_000012_460 Hb_007426_160--Hb_001439_060 Hb_000932_100 Hb_000932_100 Hb_007426_160--Hb_000932_100 Hb_000160_320 Hb_000160_320 Hb_007426_160--Hb_000160_320 Hb_000630_040 Hb_000630_040 Hb_007426_160--Hb_000630_040 Hb_150379_010 Hb_150379_010 Hb_007426_160--Hb_150379_010 Hb_005282_020 Hb_005282_020 Hb_000012_160--Hb_005282_020 Hb_003544_010 Hb_003544_010 Hb_000012_160--Hb_003544_010 Hb_002518_120 Hb_002518_120 Hb_000012_160--Hb_002518_120 Hb_007894_220 Hb_007894_220 Hb_000012_160--Hb_007894_220 Hb_002685_060 Hb_002685_060 Hb_000012_160--Hb_002685_060 Hb_002282_070 Hb_002282_070 Hb_000012_160--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10382 0 0.0373789 0 0.0711508 0.0428892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.389922 0.0876508 0.123955 0.218385 0.414211

CAGE analysis