Hb_002243_070

Information

Type -
Description -
Location Contig2243: 110767-118792
Sequence    

Annotation

kegg
ID rcu:RCOM_0759640
description sodium-bile acid cotransporter, putative
nr
ID XP_002526459.1
description sodium-bile acid cotransporter, putative [Ricinus communis]
swissprot
ID Q93YR2
description Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1
trembl
ID B9SKE0
description Sodium-bile acid cotransporter, putative OS=Ricinus communis GN=RCOM_0759640 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable sodium metabolite cotransporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002243_070 0.0 - - sodium-bile acid cotransporter, putative [Ricinus communis]
2 Hb_042202_050 0.2451449231 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
3 Hb_002888_020 0.2455136927 - - -
4 Hb_004734_050 0.2465800984 - - -
5 Hb_003005_040 0.2560047391 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_004097_060 0.2820857077 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000156_210 0.2857959505 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
8 Hb_039262_010 0.2890647343 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
9 Hb_003688_070 0.2897273021 - - PREDICTED: mitochondrial substrate carrier family protein E [Jatropha curcas]
10 Hb_003124_020 0.2911292657 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
11 Hb_007054_050 0.2923486369 - - -
12 Hb_000052_020 0.2943248201 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
13 Hb_008698_010 0.3034416553 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_067069_010 0.3042715034 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
15 Hb_181240_010 0.3054489605 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
16 Hb_000399_010 0.3097844877 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_008326_010 0.3098685579 - - putative polyprotein [Oryza sativa Japonica Group]
18 Hb_000122_210 0.3106591722 - - -
19 Hb_001284_010 0.3137825281 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
20 Hb_011484_010 0.313914592 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_002243_070 Hb_002243_070 Hb_042202_050 Hb_042202_050 Hb_002243_070--Hb_042202_050 Hb_002888_020 Hb_002888_020 Hb_002243_070--Hb_002888_020 Hb_004734_050 Hb_004734_050 Hb_002243_070--Hb_004734_050 Hb_003005_040 Hb_003005_040 Hb_002243_070--Hb_003005_040 Hb_004097_060 Hb_004097_060 Hb_002243_070--Hb_004097_060 Hb_000156_210 Hb_000156_210 Hb_002243_070--Hb_000156_210 Hb_001284_010 Hb_001284_010 Hb_042202_050--Hb_001284_010 Hb_000052_020 Hb_000052_020 Hb_042202_050--Hb_000052_020 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_000997_360 Hb_000997_360 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010 Hb_039262_010 Hb_039262_010 Hb_002888_020--Hb_039262_010 Hb_002874_040 Hb_002874_040 Hb_002888_020--Hb_002874_040 Hb_004440_080 Hb_004440_080 Hb_002888_020--Hb_004440_080 Hb_086077_020 Hb_086077_020 Hb_002888_020--Hb_086077_020 Hb_000012_160 Hb_000012_160 Hb_002888_020--Hb_000012_160 Hb_181240_010 Hb_181240_010 Hb_004734_050--Hb_181240_010 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004448_060 Hb_004448_060 Hb_004734_050--Hb_004448_060 Hb_000915_030 Hb_000915_030 Hb_004734_050--Hb_000915_030 Hb_004734_050--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_004734_050--Hb_011484_010 Hb_003005_040--Hb_181240_010 Hb_004324_080 Hb_004324_080 Hb_003005_040--Hb_004324_080 Hb_006132_030 Hb_006132_030 Hb_003005_040--Hb_006132_030 Hb_003005_040--Hb_004734_050 Hb_001229_020 Hb_001229_020 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010 Hb_000634_040 Hb_000634_040 Hb_004097_060--Hb_000634_040 Hb_000066_100 Hb_000066_100 Hb_004097_060--Hb_000066_100 Hb_001251_080 Hb_001251_080 Hb_004097_060--Hb_001251_080 Hb_031718_010 Hb_031718_010 Hb_004097_060--Hb_031718_010 Hb_002221_040 Hb_002221_040 Hb_004097_060--Hb_002221_040 Hb_004097_060--Hb_006738_020 Hb_007632_170 Hb_007632_170 Hb_000156_210--Hb_007632_170 Hb_019040_030 Hb_019040_030 Hb_000156_210--Hb_019040_030 Hb_000191_080 Hb_000191_080 Hb_000156_210--Hb_000191_080 Hb_005846_030 Hb_005846_030 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_002078_300 Hb_002078_300 Hb_000156_210--Hb_002078_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0812674 0 0 0 0.129698 0.142918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.223189 0.877374 0.315182 0.379818 1.51471

CAGE analysis