Hb_000066_100

Information

Type -
Description -
Location Contig66: 166681-170579
Sequence    

Annotation

kegg
ID pop:POPTR_0010s23960g
description POPTRDRAFT_822618; hypothetical protein
nr
ID XP_012090113.1
description PREDICTED: uncharacterized protein LOC105648357 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A9PAB2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s23960g PE=2 SV=1
Gene Ontology
ID GO:0009941
description inorganic polyphosphate atp-nad kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52916: 166683-170597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_100 0.0 - - PREDICTED: uncharacterized protein LOC105648357 [Jatropha curcas]
2 Hb_003633_060 0.1083055301 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_000933_160 0.1167515801 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
4 Hb_002798_020 0.1178529327 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
5 Hb_000676_160 0.1193595441 - - folate carrier protein, putative [Ricinus communis]
6 Hb_000265_050 0.1220024148 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
7 Hb_001373_060 0.1242000126 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
8 Hb_001158_230 0.1266322552 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_002687_170 0.1295394717 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
10 Hb_002909_130 0.1320587666 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_007065_010 0.1323116074 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
12 Hb_000169_040 0.1325741819 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
13 Hb_003540_240 0.1328199654 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
14 Hb_002235_350 0.1342425648 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
15 Hb_001989_090 0.1365587843 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
16 Hb_000567_410 0.1390729181 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
17 Hb_000134_070 0.1391879233 - - 60S ribosomal protein L6, putative [Ricinus communis]
18 Hb_002259_070 0.1397487883 - - taz protein, putative [Ricinus communis]
19 Hb_000046_560 0.14080181 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
20 Hb_000453_120 0.1410541114 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000066_100 Hb_000066_100 Hb_003633_060 Hb_003633_060 Hb_000066_100--Hb_003633_060 Hb_000933_160 Hb_000933_160 Hb_000066_100--Hb_000933_160 Hb_002798_020 Hb_002798_020 Hb_000066_100--Hb_002798_020 Hb_000676_160 Hb_000676_160 Hb_000066_100--Hb_000676_160 Hb_000265_050 Hb_000265_050 Hb_000066_100--Hb_000265_050 Hb_001373_060 Hb_001373_060 Hb_000066_100--Hb_001373_060 Hb_003633_060--Hb_001373_060 Hb_179296_010 Hb_179296_010 Hb_003633_060--Hb_179296_010 Hb_000320_330 Hb_000320_330 Hb_003633_060--Hb_000320_330 Hb_004057_010 Hb_004057_010 Hb_003633_060--Hb_004057_010 Hb_000567_410 Hb_000567_410 Hb_003633_060--Hb_000567_410 Hb_001512_080 Hb_001512_080 Hb_003633_060--Hb_001512_080 Hb_076626_010 Hb_076626_010 Hb_000933_160--Hb_076626_010 Hb_001158_230 Hb_001158_230 Hb_000933_160--Hb_001158_230 Hb_010672_070 Hb_010672_070 Hb_000933_160--Hb_010672_070 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_002687_170 Hb_002687_170 Hb_000933_160--Hb_002687_170 Hb_002999_050 Hb_002999_050 Hb_000933_160--Hb_002999_050 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_174865_010 Hb_174865_010 Hb_000676_160--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000676_160--Hb_000735_040 Hb_000676_160--Hb_002798_020 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090 Hb_000265_050--Hb_004127_020 Hb_005063_050 Hb_005063_050 Hb_000265_050--Hb_005063_050 Hb_000136_170 Hb_000136_170 Hb_000265_050--Hb_000136_170 Hb_003893_050 Hb_003893_050 Hb_000265_050--Hb_003893_050 Hb_004459_040 Hb_004459_040 Hb_000265_050--Hb_004459_040 Hb_003494_050 Hb_003494_050 Hb_001373_060--Hb_003494_050 Hb_001373_060--Hb_004057_010 Hb_000005_300 Hb_000005_300 Hb_001373_060--Hb_000005_300 Hb_006198_070 Hb_006198_070 Hb_001373_060--Hb_006198_070 Hb_001431_080 Hb_001431_080 Hb_001373_060--Hb_001431_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8744 4.04372 20.6877 16.3016 17.561 28.5312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.973 111.467 30.5574 18.0132 34.601

CAGE analysis