Hb_001251_080

Information

Type -
Description -
Location Contig1251: 104460-107593
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001251_080 0.0 - - -
2 Hb_019253_030 0.1856304801 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
3 Hb_000574_160 0.1922906704 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
4 Hb_001019_040 0.1942831623 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
5 Hb_001246_060 0.195513989 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001287_030 0.1961281298 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
7 Hb_000979_200 0.2024871409 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
8 Hb_089839_020 0.2026494925 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
9 Hb_003734_140 0.2043353377 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003992_240 0.2045925129 - - -
11 Hb_004586_170 0.206016495 - - hypothetical protein PRUPE_ppa011196mg [Prunus persica]
12 Hb_001235_210 0.2067411599 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000732_130 0.2080577756 transcription factor TF Family: HSF hypothetical protein JCGZ_17108 [Jatropha curcas]
14 Hb_143766_050 0.2093117221 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
15 Hb_007044_060 0.2093565569 - - ATP binding protein, putative [Ricinus communis]
16 Hb_002375_090 0.2101563673 - - -
17 Hb_000251_130 0.2101944476 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
18 Hb_000487_230 0.2107361015 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
19 Hb_002259_070 0.2108992027 - - taz protein, putative [Ricinus communis]
20 Hb_002636_160 0.2114701838 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]

Gene co-expression network

sample Hb_001251_080 Hb_001251_080 Hb_019253_030 Hb_019253_030 Hb_001251_080--Hb_019253_030 Hb_000574_160 Hb_000574_160 Hb_001251_080--Hb_000574_160 Hb_001019_040 Hb_001019_040 Hb_001251_080--Hb_001019_040 Hb_001246_060 Hb_001246_060 Hb_001251_080--Hb_001246_060 Hb_001287_030 Hb_001287_030 Hb_001251_080--Hb_001287_030 Hb_000979_200 Hb_000979_200 Hb_001251_080--Hb_000979_200 Hb_002259_070 Hb_002259_070 Hb_019253_030--Hb_002259_070 Hb_143766_050 Hb_143766_050 Hb_019253_030--Hb_143766_050 Hb_010261_060 Hb_010261_060 Hb_019253_030--Hb_010261_060 Hb_019253_030--Hb_000574_160 Hb_009686_030 Hb_009686_030 Hb_019253_030--Hb_009686_030 Hb_001540_010 Hb_001540_010 Hb_019253_030--Hb_001540_010 Hb_000906_040 Hb_000906_040 Hb_000574_160--Hb_000906_040 Hb_002235_350 Hb_002235_350 Hb_000574_160--Hb_002235_350 Hb_000574_160--Hb_002259_070 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_001780_040 Hb_001780_040 Hb_000574_160--Hb_001780_040 Hb_001840_120 Hb_001840_120 Hb_001019_040--Hb_001840_120 Hb_001587_020 Hb_001587_020 Hb_001019_040--Hb_001587_020 Hb_000329_310 Hb_000329_310 Hb_001019_040--Hb_000329_310 Hb_020000_010 Hb_020000_010 Hb_001019_040--Hb_020000_010 Hb_001117_090 Hb_001117_090 Hb_001019_040--Hb_001117_090 Hb_000170_010 Hb_000170_010 Hb_001019_040--Hb_000170_010 Hb_001951_140 Hb_001951_140 Hb_001246_060--Hb_001951_140 Hb_001246_060--Hb_001117_090 Hb_002686_020 Hb_002686_020 Hb_001246_060--Hb_002686_020 Hb_002205_070 Hb_002205_070 Hb_001246_060--Hb_002205_070 Hb_001246_060--Hb_001540_010 Hb_026549_040 Hb_026549_040 Hb_001246_060--Hb_026549_040 Hb_034406_020 Hb_034406_020 Hb_001287_030--Hb_034406_020 Hb_005463_040 Hb_005463_040 Hb_001287_030--Hb_005463_040 Hb_000732_130 Hb_000732_130 Hb_001287_030--Hb_000732_130 Hb_001292_020 Hb_001292_020 Hb_001287_030--Hb_001292_020 Hb_008221_140 Hb_008221_140 Hb_001287_030--Hb_008221_140 Hb_004586_170 Hb_004586_170 Hb_001287_030--Hb_004586_170 Hb_003581_100 Hb_003581_100 Hb_000979_200--Hb_003581_100 Hb_000979_200--Hb_004586_170 Hb_028486_030 Hb_028486_030 Hb_000979_200--Hb_028486_030 Hb_000979_200--Hb_001246_060 Hb_000979_200--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_000979_200--Hb_012675_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126729 0.102383 0.0380441 0 0.143588 0.215055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115914 0.546487 0.156999 0.112731 0.173505

CAGE analysis