Hb_000634_040

Information

Type -
Description -
Location Contig634: 49755-54299
Sequence    

Annotation

kegg
ID pop:POPTR_0003s03330g
description beta-amylase family protein
nr
ID XP_012075356.1
description PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
swissprot
ID O23553
description Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3
trembl
ID A0A067LBX2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11889 PE=3 SV=1
Gene Ontology
ID GO:0016161
description chloroplast beta-amylase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000634_040 0.0 - - PREDICTED: beta-amylase 3, chloroplastic [Jatropha curcas]
2 Hb_000398_040 0.1039793808 - - Auxin response factor, putative [Ricinus communis]
3 Hb_001775_110 0.1201147045 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
4 Hb_000933_160 0.1263483168 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
5 Hb_001923_010 0.1268745858 - - PREDICTED: outer envelope protein 80, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_027380_180 0.1276696664 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]
7 Hb_009113_070 0.133432069 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
8 Hb_143766_050 0.1361810574 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
9 Hb_168905_010 0.1378827318 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
10 Hb_000453_120 0.1401785989 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
11 Hb_001287_030 0.140858149 - - 30S ribosomal protein S31, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000046_050 0.1423967283 - - PREDICTED: LEC14B homolog [Jatropha curcas]
13 Hb_002221_040 0.1426693456 - - PREDICTED: uncharacterized protein LOC105639851 [Jatropha curcas]
14 Hb_001083_020 0.1431335028 - - -
15 Hb_003734_140 0.1440537462 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000962_040 0.1458849791 - - heat shock protein binding protein, putative [Ricinus communis]
17 Hb_006031_020 0.1460192282 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
18 Hb_001085_120 0.1475008181 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
19 Hb_012753_160 0.1481272169 - - ara4-interacting protein, putative [Ricinus communis]
20 Hb_004324_270 0.14860938 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]

Gene co-expression network

sample Hb_000634_040 Hb_000634_040 Hb_000398_040 Hb_000398_040 Hb_000634_040--Hb_000398_040 Hb_001775_110 Hb_001775_110 Hb_000634_040--Hb_001775_110 Hb_000933_160 Hb_000933_160 Hb_000634_040--Hb_000933_160 Hb_001923_010 Hb_001923_010 Hb_000634_040--Hb_001923_010 Hb_027380_180 Hb_027380_180 Hb_000634_040--Hb_027380_180 Hb_009113_070 Hb_009113_070 Hb_000634_040--Hb_009113_070 Hb_000398_040--Hb_001775_110 Hb_000398_040--Hb_009113_070 Hb_000841_020 Hb_000841_020 Hb_000398_040--Hb_000841_020 Hb_001083_020 Hb_001083_020 Hb_000398_040--Hb_001083_020 Hb_114336_020 Hb_114336_020 Hb_000398_040--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_000398_040--Hb_011534_030 Hb_001775_110--Hb_001083_020 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_001775_110--Hb_114336_020 Hb_076626_010 Hb_076626_010 Hb_000933_160--Hb_076626_010 Hb_001158_230 Hb_001158_230 Hb_000933_160--Hb_001158_230 Hb_010672_070 Hb_010672_070 Hb_000933_160--Hb_010672_070 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_002687_170 Hb_002687_170 Hb_000933_160--Hb_002687_170 Hb_002999_050 Hb_002999_050 Hb_000933_160--Hb_002999_050 Hb_000072_080 Hb_000072_080 Hb_001923_010--Hb_000072_080 Hb_001141_030 Hb_001141_030 Hb_001923_010--Hb_001141_030 Hb_001141_280 Hb_001141_280 Hb_001923_010--Hb_001141_280 Hb_012753_160 Hb_012753_160 Hb_001923_010--Hb_012753_160 Hb_000479_010 Hb_000479_010 Hb_001923_010--Hb_000479_010 Hb_034406_020 Hb_034406_020 Hb_001923_010--Hb_034406_020 Hb_000061_130 Hb_000061_130 Hb_027380_180--Hb_000061_130 Hb_000193_120 Hb_000193_120 Hb_027380_180--Hb_000193_120 Hb_026048_070 Hb_026048_070 Hb_027380_180--Hb_026048_070 Hb_000103_010 Hb_000103_010 Hb_027380_180--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_027380_180--Hb_001085_270 Hb_005474_060 Hb_005474_060 Hb_027380_180--Hb_005474_060 Hb_172932_010 Hb_172932_010 Hb_009113_070--Hb_172932_010 Hb_009113_070--Hb_011534_030 Hb_000617_150 Hb_000617_150 Hb_009113_070--Hb_000617_150 Hb_009113_070--Hb_000841_020 Hb_000143_030 Hb_000143_030 Hb_009113_070--Hb_000143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525905 0.0369744 0.094179 0.0284959 0.154963 0.118297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.169311 0.399624 0.251077 0.123924 0.139829

CAGE analysis