Hb_007276_020

Information

Type -
Description -
Location Contig7276: 87934-92573
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007276_020 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_002602_020 0.1781514642 - - -
3 Hb_012146_030 0.2312792384 - - -
4 Hb_015026_080 0.2470923028 - - -
5 Hb_182831_010 0.2522621752 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_006054_050 0.2527168511 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
7 Hb_000702_080 0.253211437 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
8 Hb_001366_160 0.2547092998 - - -
9 Hb_103362_010 0.2606190772 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_001080_090 0.2620247978 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
11 Hb_004117_140 0.2626854222 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
12 Hb_000331_650 0.2655824335 - - PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
13 Hb_000087_140 0.2670783991 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
14 Hb_001951_180 0.2676039357 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_003884_040 0.2678312018 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]
16 Hb_000130_260 0.2703766936 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
17 Hb_002304_020 0.2714038395 - - -
18 Hb_003206_020 0.2715533304 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
19 Hb_044187_010 0.274997269 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_011316_090 0.2753070684 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_007276_020 Hb_007276_020 Hb_002602_020 Hb_002602_020 Hb_007276_020--Hb_002602_020 Hb_012146_030 Hb_012146_030 Hb_007276_020--Hb_012146_030 Hb_015026_080 Hb_015026_080 Hb_007276_020--Hb_015026_080 Hb_182831_010 Hb_182831_010 Hb_007276_020--Hb_182831_010 Hb_006054_050 Hb_006054_050 Hb_007276_020--Hb_006054_050 Hb_000702_080 Hb_000702_080 Hb_007276_020--Hb_000702_080 Hb_002304_020 Hb_002304_020 Hb_002602_020--Hb_002304_020 Hb_000982_110 Hb_000982_110 Hb_002602_020--Hb_000982_110 Hb_000062_140 Hb_000062_140 Hb_002602_020--Hb_000062_140 Hb_003663_060 Hb_003663_060 Hb_002602_020--Hb_003663_060 Hb_002188_120 Hb_002188_120 Hb_002602_020--Hb_002188_120 Hb_002217_260 Hb_002217_260 Hb_012146_030--Hb_002217_260 Hb_001951_180 Hb_001951_180 Hb_012146_030--Hb_001951_180 Hb_000087_140 Hb_000087_140 Hb_012146_030--Hb_000087_140 Hb_012146_030--Hb_000702_080 Hb_012146_030--Hb_006054_050 Hb_001080_090 Hb_001080_090 Hb_012146_030--Hb_001080_090 Hb_001832_040 Hb_001832_040 Hb_015026_080--Hb_001832_040 Hb_002518_120 Hb_002518_120 Hb_015026_080--Hb_002518_120 Hb_015026_080--Hb_000087_140 Hb_005250_030 Hb_005250_030 Hb_015026_080--Hb_005250_030 Hb_000349_240 Hb_000349_240 Hb_015026_080--Hb_000349_240 Hb_031658_040 Hb_031658_040 Hb_015026_080--Hb_031658_040 Hb_000139_150 Hb_000139_150 Hb_182831_010--Hb_000139_150 Hb_182831_010--Hb_002602_020 Hb_182831_010--Hb_015026_080 Hb_182831_010--Hb_006054_050 Hb_000057_050 Hb_000057_050 Hb_182831_010--Hb_000057_050 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_000130_260 Hb_000130_260 Hb_006054_050--Hb_000130_260 Hb_004241_020 Hb_004241_020 Hb_000702_080--Hb_004241_020 Hb_005237_050 Hb_005237_050 Hb_000702_080--Hb_005237_050 Hb_000107_570 Hb_000107_570 Hb_000702_080--Hb_000107_570 Hb_000702_080--Hb_002217_260 Hb_000702_080--Hb_000130_260 Hb_000297_150 Hb_000297_150 Hb_000702_080--Hb_000297_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0181692 0.0268821 0 0.0033333 0.0306353 0.0242883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0308646 0.0161931 0.0155594 0.00641234 0.104171

CAGE analysis