Hb_182831_010

Information

Type -
Description -
Location Contig182831: 289-2546
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182831_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000139_150 0.233848243 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
3 Hb_002602_020 0.2503737094 - - -
4 Hb_007276_020 0.2522621752 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_015026_080 0.2590979527 - - -
6 Hb_006054_050 0.2594496005 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
7 Hb_000057_050 0.2600834558 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
8 Hb_001366_160 0.2699425369 - - -
9 Hb_000236_450 0.2785971776 - - coated vesicle membrane protein, putative [Ricinus communis]
10 Hb_002518_120 0.2799601003 - - hypothetical protein RCOM_0731250 [Ricinus communis]
11 Hb_003376_080 0.2859397399 - - PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
12 Hb_032705_020 0.2891629221 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
13 Hb_002188_120 0.2893759903 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
14 Hb_001595_080 0.2914788128 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001009_100 0.2918643546 - - -
16 Hb_033661_010 0.2923924249 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
17 Hb_003206_020 0.2952796532 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
18 Hb_012146_030 0.2956473554 - - -
19 Hb_044187_010 0.2972506713 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
20 Hb_011931_060 0.2975811381 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]

Gene co-expression network

sample Hb_182831_010 Hb_182831_010 Hb_000139_150 Hb_000139_150 Hb_182831_010--Hb_000139_150 Hb_002602_020 Hb_002602_020 Hb_182831_010--Hb_002602_020 Hb_007276_020 Hb_007276_020 Hb_182831_010--Hb_007276_020 Hb_015026_080 Hb_015026_080 Hb_182831_010--Hb_015026_080 Hb_006054_050 Hb_006054_050 Hb_182831_010--Hb_006054_050 Hb_000057_050 Hb_000057_050 Hb_182831_010--Hb_000057_050 Hb_001366_160 Hb_001366_160 Hb_000139_150--Hb_001366_160 Hb_001009_100 Hb_001009_100 Hb_000139_150--Hb_001009_100 Hb_031658_040 Hb_031658_040 Hb_000139_150--Hb_031658_040 Hb_065408_010 Hb_065408_010 Hb_000139_150--Hb_065408_010 Hb_003388_030 Hb_003388_030 Hb_000139_150--Hb_003388_030 Hb_004884_020 Hb_004884_020 Hb_000139_150--Hb_004884_020 Hb_002602_020--Hb_007276_020 Hb_002304_020 Hb_002304_020 Hb_002602_020--Hb_002304_020 Hb_000982_110 Hb_000982_110 Hb_002602_020--Hb_000982_110 Hb_000062_140 Hb_000062_140 Hb_002602_020--Hb_000062_140 Hb_003663_060 Hb_003663_060 Hb_002602_020--Hb_003663_060 Hb_002188_120 Hb_002188_120 Hb_002602_020--Hb_002188_120 Hb_012146_030 Hb_012146_030 Hb_007276_020--Hb_012146_030 Hb_007276_020--Hb_015026_080 Hb_007276_020--Hb_006054_050 Hb_000702_080 Hb_000702_080 Hb_007276_020--Hb_000702_080 Hb_001832_040 Hb_001832_040 Hb_015026_080--Hb_001832_040 Hb_002518_120 Hb_002518_120 Hb_015026_080--Hb_002518_120 Hb_000087_140 Hb_000087_140 Hb_015026_080--Hb_000087_140 Hb_005250_030 Hb_005250_030 Hb_015026_080--Hb_005250_030 Hb_000349_240 Hb_000349_240 Hb_015026_080--Hb_000349_240 Hb_015026_080--Hb_031658_040 Hb_006054_050--Hb_012146_030 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_000130_260 Hb_000130_260 Hb_006054_050--Hb_000130_260 Hb_048141_020 Hb_048141_020 Hb_000057_050--Hb_048141_020 Hb_023278_010 Hb_023278_010 Hb_000057_050--Hb_023278_010 Hb_005527_030 Hb_005527_030 Hb_000057_050--Hb_005527_030 Hb_000134_310 Hb_000134_310 Hb_000057_050--Hb_000134_310 Hb_000057_050--Hb_003388_030 Hb_000170_190 Hb_000170_190 Hb_000057_050--Hb_000170_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0238231 0.0239344 0 0.0208789 0.113239 0.0478805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0546218 0.0429573 0 0.0346027 0.174975

CAGE analysis