Hb_006054_050

Information

Type -
Description -
Location Contig6054: 78780-81903
Sequence    

Annotation

kegg
ID sot:102604101
description uncharacterized LOC102604101
nr
ID XP_012091232.1
description PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0A9D2Y9
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006054_050 0.0 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
2 Hb_012146_030 0.1480458638 - - -
3 Hb_015026_080 0.1732786264 - - -
4 Hb_000753_200 0.1766958462 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
5 Hb_006788_160 0.1805948023 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
6 Hb_035755_010 0.1810594169 - - unknown [Populus trichocarpa]
7 Hb_000130_260 0.1850390035 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
8 Hb_006117_040 0.1877231162 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
9 Hb_000134_310 0.1890567444 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
10 Hb_000627_250 0.19509186 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
11 Hb_000331_650 0.1952737413 - - PREDICTED: peptide methionine sulfoxide reductase-like [Jatropha curcas]
12 Hb_001259_020 0.1965106309 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
13 Hb_000087_140 0.1985246306 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
14 Hb_031658_040 0.1995454903 - - -
15 Hb_011931_060 0.1996241933 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
16 Hb_044187_010 0.200232001 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
17 Hb_000977_210 0.2003163649 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
18 Hb_005470_020 0.2004852589 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
19 Hb_000358_140 0.2028693392 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001951_180 0.2032430204 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006054_050 Hb_006054_050 Hb_012146_030 Hb_012146_030 Hb_006054_050--Hb_012146_030 Hb_015026_080 Hb_015026_080 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_000130_260 Hb_000130_260 Hb_006054_050--Hb_000130_260 Hb_002217_260 Hb_002217_260 Hb_012146_030--Hb_002217_260 Hb_001951_180 Hb_001951_180 Hb_012146_030--Hb_001951_180 Hb_000087_140 Hb_000087_140 Hb_012146_030--Hb_000087_140 Hb_000702_080 Hb_000702_080 Hb_012146_030--Hb_000702_080 Hb_001080_090 Hb_001080_090 Hb_012146_030--Hb_001080_090 Hb_001832_040 Hb_001832_040 Hb_015026_080--Hb_001832_040 Hb_002518_120 Hb_002518_120 Hb_015026_080--Hb_002518_120 Hb_015026_080--Hb_000087_140 Hb_005250_030 Hb_005250_030 Hb_015026_080--Hb_005250_030 Hb_000349_240 Hb_000349_240 Hb_015026_080--Hb_000349_240 Hb_031658_040 Hb_031658_040 Hb_015026_080--Hb_031658_040 Hb_000265_230 Hb_000265_230 Hb_000753_200--Hb_000265_230 Hb_000753_200--Hb_035755_010 Hb_006816_430 Hb_006816_430 Hb_000753_200--Hb_006816_430 Hb_000920_060 Hb_000920_060 Hb_000753_200--Hb_000920_060 Hb_000160_210 Hb_000160_210 Hb_000753_200--Hb_000160_210 Hb_001123_260 Hb_001123_260 Hb_000753_200--Hb_001123_260 Hb_000345_170 Hb_000345_170 Hb_006788_160--Hb_000345_170 Hb_154745_010 Hb_154745_010 Hb_006788_160--Hb_154745_010 Hb_000977_210 Hb_000977_210 Hb_006788_160--Hb_000977_210 Hb_002527_030 Hb_002527_030 Hb_006788_160--Hb_002527_030 Hb_010642_030 Hb_010642_030 Hb_006788_160--Hb_010642_030 Hb_000367_130 Hb_000367_130 Hb_006788_160--Hb_000367_130 Hb_001014_160 Hb_001014_160 Hb_035755_010--Hb_001014_160 Hb_008785_040 Hb_008785_040 Hb_035755_010--Hb_008785_040 Hb_035755_010--Hb_001123_260 Hb_004963_030 Hb_004963_030 Hb_035755_010--Hb_004963_030 Hb_010710_070 Hb_010710_070 Hb_035755_010--Hb_010710_070 Hb_029584_070 Hb_029584_070 Hb_000130_260--Hb_029584_070 Hb_001790_080 Hb_001790_080 Hb_000130_260--Hb_001790_080 Hb_002758_010 Hb_002758_010 Hb_000130_260--Hb_002758_010 Hb_001936_090 Hb_001936_090 Hb_000130_260--Hb_001936_090 Hb_000130_260--Hb_001080_090 Hb_004899_260 Hb_004899_260 Hb_000130_260--Hb_004899_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0177 0.532712 0.297728 0.118672 0.857985 0.692849
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.588739 0.635352 0.0757706 0.362565 1.74616

CAGE analysis