Hb_012146_030

Information

Type -
Description -
Location Contig12146: 24722-30742
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012146_030 0.0 - - -
2 Hb_002217_260 0.1344412256 - - PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas]
3 Hb_001951_180 0.1365079424 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000087_140 0.1385523359 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
5 Hb_000702_080 0.1417471958 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
6 Hb_006054_050 0.1480458638 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
7 Hb_001080_090 0.1577721012 - - PREDICTED: BTB/POZ domain-containing protein At2g30600 isoform X1 [Jatropha curcas]
8 Hb_011316_090 0.158237892 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
9 Hb_000130_260 0.1584839356 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
10 Hb_000107_570 0.1587206403 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
11 Hb_044187_010 0.1588769705 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_005237_050 0.1596546257 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
13 Hb_006117_040 0.1632467211 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
14 Hb_005253_030 0.1667359127 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_093458_060 0.1673275743 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
16 Hb_035755_010 0.1677195482 - - unknown [Populus trichocarpa]
17 Hb_036790_080 0.167746138 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
18 Hb_001259_020 0.1703815375 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
19 Hb_000130_320 0.1710149028 desease resistance Gene Name: AAA PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
20 Hb_004241_020 0.1714564927 - - PREDICTED: DAG protein, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_012146_030 Hb_012146_030 Hb_002217_260 Hb_002217_260 Hb_012146_030--Hb_002217_260 Hb_001951_180 Hb_001951_180 Hb_012146_030--Hb_001951_180 Hb_000087_140 Hb_000087_140 Hb_012146_030--Hb_000087_140 Hb_000702_080 Hb_000702_080 Hb_012146_030--Hb_000702_080 Hb_006054_050 Hb_006054_050 Hb_012146_030--Hb_006054_050 Hb_001080_090 Hb_001080_090 Hb_012146_030--Hb_001080_090 Hb_000462_090 Hb_000462_090 Hb_002217_260--Hb_000462_090 Hb_001584_200 Hb_001584_200 Hb_002217_260--Hb_001584_200 Hb_036790_080 Hb_036790_080 Hb_002217_260--Hb_036790_080 Hb_009775_010 Hb_009775_010 Hb_002217_260--Hb_009775_010 Hb_000080_120 Hb_000080_120 Hb_002217_260--Hb_000080_120 Hb_021346_030 Hb_021346_030 Hb_002217_260--Hb_021346_030 Hb_002276_020 Hb_002276_020 Hb_001951_180--Hb_002276_020 Hb_001951_180--Hb_036790_080 Hb_011316_090 Hb_011316_090 Hb_001951_180--Hb_011316_090 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_000261_060 Hb_000261_060 Hb_001951_180--Hb_000261_060 Hb_153533_010 Hb_153533_010 Hb_001951_180--Hb_153533_010 Hb_001790_080 Hb_001790_080 Hb_000087_140--Hb_001790_080 Hb_000087_140--Hb_036790_080 Hb_000130_320 Hb_000130_320 Hb_000087_140--Hb_000130_320 Hb_000349_240 Hb_000349_240 Hb_000087_140--Hb_000349_240 Hb_001435_030 Hb_001435_030 Hb_000087_140--Hb_001435_030 Hb_003952_060 Hb_003952_060 Hb_000087_140--Hb_003952_060 Hb_004241_020 Hb_004241_020 Hb_000702_080--Hb_004241_020 Hb_005237_050 Hb_005237_050 Hb_000702_080--Hb_005237_050 Hb_000107_570 Hb_000107_570 Hb_000702_080--Hb_000107_570 Hb_000702_080--Hb_002217_260 Hb_000130_260 Hb_000130_260 Hb_000702_080--Hb_000130_260 Hb_000297_150 Hb_000297_150 Hb_000702_080--Hb_000297_150 Hb_015026_080 Hb_015026_080 Hb_006054_050--Hb_015026_080 Hb_000753_200 Hb_000753_200 Hb_006054_050--Hb_000753_200 Hb_006788_160 Hb_006788_160 Hb_006054_050--Hb_006788_160 Hb_035755_010 Hb_035755_010 Hb_006054_050--Hb_035755_010 Hb_006054_050--Hb_000130_260 Hb_004899_260 Hb_004899_260 Hb_001080_090--Hb_004899_260 Hb_000282_080 Hb_000282_080 Hb_001080_090--Hb_000282_080 Hb_001080_090--Hb_001790_080 Hb_001080_090--Hb_000130_260 Hb_001589_010 Hb_001589_010 Hb_001080_090--Hb_001589_010 Hb_002758_010 Hb_002758_010 Hb_001080_090--Hb_002758_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.21774 0.541009 0.467711 0.263973 0.895187 0.530654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01689 0.898805 0.51095 0.579495 2.82078

CAGE analysis