Hb_005372_020

Information

Type -
Description -
Location Contig5372: 28588-29287
Sequence    

Annotation

kegg
ID aje:HCAG_01439
description hypothetical protein
nr
ID XP_010456869.1
description PREDICTED: uncharacterized protein LOC104738384 [Camelina sativa]
swissprot
ID -
description -
trembl
ID A6QVN2
description Predicted protein OS=Ajellomyces capsulatus (strain NAm1 / WU24) GN=HCAG_01439 PE=4 SV=1
Gene Ontology
ID GO:0003676
description cchc-type integrase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005372_020 0.0 - - PREDICTED: uncharacterized protein LOC104738384 [Camelina sativa]
2 Hb_000258_340 0.2960626487 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26900, mitochondrial [Jatropha curcas]
3 Hb_002205_060 0.3116308862 - - -
4 Hb_012490_100 0.3148737308 - - -
5 Hb_056012_020 0.3303623879 - - -
6 Hb_092650_010 0.3320032482 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
7 Hb_000656_090 0.3351994722 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
8 Hb_000160_160 0.3399859014 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
9 Hb_027760_030 0.3468057401 - - -
10 Hb_020411_010 0.3494527099 - - phosphoprotein phosphatase, putative [Ricinus communis]
11 Hb_012627_020 0.3525469719 - - PHYTOCHROME AND FLOWERING TIME 1 family protein [Populus trichocarpa]
12 Hb_000684_440 0.3532547514 - - hypothetical protein CICLE_v100111082mg, partial [Citrus clementina]
13 Hb_003944_020 0.3580737429 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
14 Hb_004440_080 0.3624085165 - - PREDICTED: syntaxin-112 [Populus euphratica]
15 Hb_010977_010 0.3691293349 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_025190_010 0.3700913734 - - conserved hypothetical protein [Ricinus communis]
17 Hb_036988_010 0.3705198322 - - hypothetical protein JCGZ_25496 [Jatropha curcas]
18 Hb_086077_020 0.3708709092 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
19 Hb_000786_030 0.3709516024 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
20 Hb_003711_030 0.3729839205 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]

Gene co-expression network

sample Hb_005372_020 Hb_005372_020 Hb_000258_340 Hb_000258_340 Hb_005372_020--Hb_000258_340 Hb_002205_060 Hb_002205_060 Hb_005372_020--Hb_002205_060 Hb_012490_100 Hb_012490_100 Hb_005372_020--Hb_012490_100 Hb_056012_020 Hb_056012_020 Hb_005372_020--Hb_056012_020 Hb_092650_010 Hb_092650_010 Hb_005372_020--Hb_092650_010 Hb_000656_090 Hb_000656_090 Hb_005372_020--Hb_000656_090 Hb_086077_020 Hb_086077_020 Hb_000258_340--Hb_086077_020 Hb_004440_080 Hb_004440_080 Hb_000258_340--Hb_004440_080 Hb_001172_090 Hb_001172_090 Hb_000258_340--Hb_001172_090 Hb_019656_010 Hb_019656_010 Hb_000258_340--Hb_019656_010 Hb_010977_010 Hb_010977_010 Hb_000258_340--Hb_010977_010 Hb_002783_060 Hb_002783_060 Hb_002205_060--Hb_002783_060 Hb_000810_020 Hb_000810_020 Hb_002205_060--Hb_000810_020 Hb_005679_070 Hb_005679_070 Hb_002205_060--Hb_005679_070 Hb_001260_030 Hb_001260_030 Hb_002205_060--Hb_001260_030 Hb_000181_150 Hb_000181_150 Hb_002205_060--Hb_000181_150 Hb_026228_010 Hb_026228_010 Hb_002205_060--Hb_026228_010 Hb_012490_100--Hb_000181_150 Hb_012490_100--Hb_002205_060 Hb_006960_010 Hb_006960_010 Hb_012490_100--Hb_006960_010 Hb_130367_010 Hb_130367_010 Hb_012490_100--Hb_130367_010 Hb_012490_100--Hb_000656_090 Hb_009119_020 Hb_009119_020 Hb_012490_100--Hb_009119_020 Hb_000566_180 Hb_000566_180 Hb_056012_020--Hb_000566_180 Hb_001157_100 Hb_001157_100 Hb_056012_020--Hb_001157_100 Hb_000366_020 Hb_000366_020 Hb_056012_020--Hb_000366_020 Hb_008447_030 Hb_008447_030 Hb_056012_020--Hb_008447_030 Hb_069033_010 Hb_069033_010 Hb_056012_020--Hb_069033_010 Hb_034359_010 Hb_034359_010 Hb_056012_020--Hb_034359_010 Hb_020411_010 Hb_020411_010 Hb_092650_010--Hb_020411_010 Hb_003944_020 Hb_003944_020 Hb_092650_010--Hb_003944_020 Hb_001221_340 Hb_001221_340 Hb_092650_010--Hb_001221_340 Hb_000157_110 Hb_000157_110 Hb_092650_010--Hb_000157_110 Hb_002400_150 Hb_002400_150 Hb_092650_010--Hb_002400_150 Hb_076226_010 Hb_076226_010 Hb_092650_010--Hb_076226_010 Hb_000656_090--Hb_008447_030 Hb_012627_020 Hb_012627_020 Hb_000656_090--Hb_012627_020 Hb_000160_160 Hb_000160_160 Hb_000656_090--Hb_000160_160 Hb_003030_030 Hb_003030_030 Hb_000656_090--Hb_003030_030 Hb_008447_040 Hb_008447_040 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0599897 0 0.405941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117586 0 0.159005 0.0762885 0.351394

CAGE analysis