Hb_056012_020

Information

Type -
Description -
Location Contig56012: 4141-7519
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056012_020 0.0 - - -
2 Hb_000566_180 0.2519569668 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
3 Hb_001157_100 0.2629023243 - - PREDICTED: uncharacterized protein LOC104887185 [Beta vulgaris subsp. vulgaris]
4 Hb_000366_020 0.2693227365 - - -
5 Hb_008447_030 0.2781965898 - - -
6 Hb_069033_010 0.2825230298 desease resistance Gene Name: DUF720 hypothetical protein CICLE_v10002052mg [Citrus clementina]
7 Hb_034359_010 0.2865515614 - - -
8 Hb_164096_010 0.2944123902 - - hypothetical protein L484_021244 [Morus notabilis]
9 Hb_005271_230 0.2977049278 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
10 Hb_000771_090 0.3000422718 - - hypothetical protein B456_012G003500 [Gossypium raimondii]
11 Hb_006910_050 0.3001976805 - - hypothetical protein CISIN_1g0480481mg, partial [Citrus sinensis]
12 Hb_001148_080 0.3002018004 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
13 Hb_096998_010 0.3008441069 - - hypothetical protein JCGZ_07944 [Jatropha curcas]
14 Hb_000160_160 0.3030191834 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
15 Hb_000181_150 0.30451744 - - hypothetical protein PHAVU_011G1647000g, partial [Phaseolus vulgaris]
16 Hb_127127_010 0.3046483101 - - -
17 Hb_008447_040 0.3054022637 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
18 Hb_130367_010 0.3062220994 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 [Jatropha curcas]
19 Hb_006274_040 0.307738969 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
20 Hb_007973_010 0.3079105956 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_056012_020 Hb_056012_020 Hb_000566_180 Hb_000566_180 Hb_056012_020--Hb_000566_180 Hb_001157_100 Hb_001157_100 Hb_056012_020--Hb_001157_100 Hb_000366_020 Hb_000366_020 Hb_056012_020--Hb_000366_020 Hb_008447_030 Hb_008447_030 Hb_056012_020--Hb_008447_030 Hb_069033_010 Hb_069033_010 Hb_056012_020--Hb_069033_010 Hb_034359_010 Hb_034359_010 Hb_056012_020--Hb_034359_010 Hb_005271_230 Hb_005271_230 Hb_000566_180--Hb_005271_230 Hb_057796_010 Hb_057796_010 Hb_000566_180--Hb_057796_010 Hb_001404_080 Hb_001404_080 Hb_000566_180--Hb_001404_080 Hb_006274_040 Hb_006274_040 Hb_000566_180--Hb_006274_040 Hb_012490_110 Hb_012490_110 Hb_000566_180--Hb_012490_110 Hb_050034_010 Hb_050034_010 Hb_000566_180--Hb_050034_010 Hb_184520_010 Hb_184520_010 Hb_001157_100--Hb_184520_010 Hb_001157_100--Hb_069033_010 Hb_133385_010 Hb_133385_010 Hb_001157_100--Hb_133385_010 Hb_001660_020 Hb_001660_020 Hb_001157_100--Hb_001660_020 Hb_164096_010 Hb_164096_010 Hb_001157_100--Hb_164096_010 Hb_060391_010 Hb_060391_010 Hb_000366_020--Hb_060391_010 Hb_000366_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_000366_020--Hb_007456_020 Hb_000366_020--Hb_005271_230 Hb_181441_010 Hb_181441_010 Hb_000366_020--Hb_181441_010 Hb_000366_020--Hb_000566_180 Hb_000656_090 Hb_000656_090 Hb_008447_030--Hb_000656_090 Hb_026745_020 Hb_026745_020 Hb_008447_030--Hb_026745_020 Hb_008447_030--Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_008447_030--Hb_002200_040 Hb_000160_160 Hb_000160_160 Hb_008447_030--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_008447_030--Hb_008447_040 Hb_069033_010--Hb_184520_010 Hb_007064_010 Hb_007064_010 Hb_069033_010--Hb_007064_010 Hb_001829_020 Hb_001829_020 Hb_069033_010--Hb_001829_020 Hb_069033_010--Hb_000566_180 Hb_105123_020 Hb_105123_020 Hb_034359_010--Hb_105123_020 Hb_062317_020 Hb_062317_020 Hb_034359_010--Hb_062317_020 Hb_001320_020 Hb_001320_020 Hb_034359_010--Hb_001320_020 Hb_007718_020 Hb_007718_020 Hb_034359_010--Hb_007718_020 Hb_074670_010 Hb_074670_010 Hb_034359_010--Hb_074670_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.224516 0.0288765 0.419881 0 0.779715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249155 0 0.116244 0.42538 0.515286

CAGE analysis