Hb_001829_020

Information

Type -
Description -
Location Contig1829: 31136-31738
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa001087mg
description hypothetical protein
nr
ID XP_012076441.1
description PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
swissprot
ID Q04264
description Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1
trembl
ID A0A067KNY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07095 PE=4 SV=1
Gene Ontology
ID GO:0044763
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17844: 31746-32030
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001829_020 0.0 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
2 Hb_004648_100 0.256874621 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
3 Hb_005054_170 0.260197926 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
4 Hb_169620_010 0.2649114298 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_069033_010 0.2788301053 desease resistance Gene Name: DUF720 hypothetical protein CICLE_v10002052mg [Citrus clementina]
6 Hb_003216_070 0.2834360241 - - hypothetical protein RCOM_0483300 [Ricinus communis]
7 Hb_002119_070 0.2858948992 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_111985_040 0.2886328217 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
9 Hb_163658_010 0.2911174751 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_121992_010 0.2921125674 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
11 Hb_001373_010 0.292966821 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_151706_010 0.2980814826 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
13 Hb_000589_130 0.2986623997 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
14 Hb_000056_280 0.2987447144 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
15 Hb_034337_010 0.3020313246 - - vesicle-associated membrane protein, putative [Ricinus communis]
16 Hb_002027_170 0.3026977774 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
17 Hb_117895_010 0.3044159905 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
18 Hb_011310_200 0.3048640289 - - grr1, plant, putative [Ricinus communis]
19 Hb_001304_130 0.3051686419 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
20 Hb_008468_030 0.3054086369 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001829_020 Hb_001829_020 Hb_004648_100 Hb_004648_100 Hb_001829_020--Hb_004648_100 Hb_005054_170 Hb_005054_170 Hb_001829_020--Hb_005054_170 Hb_169620_010 Hb_169620_010 Hb_001829_020--Hb_169620_010 Hb_069033_010 Hb_069033_010 Hb_001829_020--Hb_069033_010 Hb_003216_070 Hb_003216_070 Hb_001829_020--Hb_003216_070 Hb_002119_070 Hb_002119_070 Hb_001829_020--Hb_002119_070 Hb_060909_010 Hb_060909_010 Hb_004648_100--Hb_060909_010 Hb_000544_020 Hb_000544_020 Hb_004648_100--Hb_000544_020 Hb_004648_100--Hb_169620_010 Hb_057079_020 Hb_057079_020 Hb_004648_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_000062_640 Hb_000062_640 Hb_005054_170--Hb_000062_640 Hb_000028_340 Hb_000028_340 Hb_005054_170--Hb_000028_340 Hb_002027_170 Hb_002027_170 Hb_005054_170--Hb_002027_170 Hb_062479_010 Hb_062479_010 Hb_005054_170--Hb_062479_010 Hb_000056_280 Hb_000056_280 Hb_005054_170--Hb_000056_280 Hb_000025_400 Hb_000025_400 Hb_005054_170--Hb_000025_400 Hb_066320_010 Hb_066320_010 Hb_169620_010--Hb_066320_010 Hb_169620_010--Hb_060909_010 Hb_163658_010 Hb_163658_010 Hb_169620_010--Hb_163658_010 Hb_169620_010--Hb_000544_020 Hb_001408_150 Hb_001408_150 Hb_169620_010--Hb_001408_150 Hb_184520_010 Hb_184520_010 Hb_069033_010--Hb_184520_010 Hb_001157_100 Hb_001157_100 Hb_069033_010--Hb_001157_100 Hb_007064_010 Hb_007064_010 Hb_069033_010--Hb_007064_010 Hb_000566_180 Hb_000566_180 Hb_069033_010--Hb_000566_180 Hb_056012_020 Hb_056012_020 Hb_069033_010--Hb_056012_020 Hb_001304_130 Hb_001304_130 Hb_003216_070--Hb_001304_130 Hb_000979_160 Hb_000979_160 Hb_003216_070--Hb_000979_160 Hb_001252_190 Hb_001252_190 Hb_003216_070--Hb_001252_190 Hb_147218_010 Hb_147218_010 Hb_003216_070--Hb_147218_010 Hb_001486_060 Hb_001486_060 Hb_003216_070--Hb_001486_060 Hb_003216_070--Hb_005054_170 Hb_010605_010 Hb_010605_010 Hb_002119_070--Hb_010605_010 Hb_004531_110 Hb_004531_110 Hb_002119_070--Hb_004531_110 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002928_120 Hb_002928_120 Hb_002119_070--Hb_002928_120 Hb_001071_060 Hb_001071_060 Hb_002119_070--Hb_001071_060 Hb_151706_010 Hb_151706_010 Hb_002119_070--Hb_151706_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.603812 0 0.384765 0 0.21259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0923928 0.159005 0.381442 0.175697

CAGE analysis