Hb_001157_100

Information

Type -
Description -
Location Contig1157: 66943-67750
Sequence    

Annotation

kegg
ID bvg:104887185
description uncharacterized LOC104887185
nr
ID XP_010670084.1
description PREDICTED: uncharacterized protein LOC104887185 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID W9RKI5
description Uncharacterized protein OS=Morus notabilis GN=L484_016880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_100 0.0 - - PREDICTED: uncharacterized protein LOC104887185 [Beta vulgaris subsp. vulgaris]
2 Hb_184520_010 0.221158517 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_069033_010 0.2618894511 desease resistance Gene Name: DUF720 hypothetical protein CICLE_v10002052mg [Citrus clementina]
4 Hb_056012_020 0.2629023243 - - -
5 Hb_133385_010 0.2904161172 - - -
6 Hb_001660_020 0.2935918804 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
7 Hb_164096_010 0.2939535899 - - hypothetical protein L484_021244 [Morus notabilis]
8 Hb_002780_060 0.3009260686 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012788_010 0.3090563037 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_043485_010 0.3107564987 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
11 Hb_083820_010 0.3121852654 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
12 Hb_003781_010 0.3132057297 - - PREDICTED: histone H2AX [Eucalyptus grandis]
13 Hb_012760_110 0.3194994333 - - PREDICTED: methyltransferase-like protein 23 isoform X1 [Jatropha curcas]
14 Hb_000940_150 0.3240362844 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
15 Hb_000631_110 0.3245986644 - - PREDICTED: activating signal cointegrator 1 complex subunit 3 [Jatropha curcas]
16 Hb_000589_130 0.3273663584 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
17 Hb_005396_060 0.3277485495 - - -
18 Hb_185830_070 0.3280008559 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
19 Hb_062671_010 0.3281322825 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_003498_130 0.3288235058 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]

Gene co-expression network

sample Hb_001157_100 Hb_001157_100 Hb_184520_010 Hb_184520_010 Hb_001157_100--Hb_184520_010 Hb_069033_010 Hb_069033_010 Hb_001157_100--Hb_069033_010 Hb_056012_020 Hb_056012_020 Hb_001157_100--Hb_056012_020 Hb_133385_010 Hb_133385_010 Hb_001157_100--Hb_133385_010 Hb_001660_020 Hb_001660_020 Hb_001157_100--Hb_001660_020 Hb_164096_010 Hb_164096_010 Hb_001157_100--Hb_164096_010 Hb_002666_020 Hb_002666_020 Hb_184520_010--Hb_002666_020 Hb_003805_060 Hb_003805_060 Hb_184520_010--Hb_003805_060 Hb_012788_010 Hb_012788_010 Hb_184520_010--Hb_012788_010 Hb_184520_010--Hb_069033_010 Hb_053125_010 Hb_053125_010 Hb_184520_010--Hb_053125_010 Hb_007064_010 Hb_007064_010 Hb_069033_010--Hb_007064_010 Hb_001829_020 Hb_001829_020 Hb_069033_010--Hb_001829_020 Hb_000566_180 Hb_000566_180 Hb_069033_010--Hb_000566_180 Hb_069033_010--Hb_056012_020 Hb_056012_020--Hb_000566_180 Hb_000366_020 Hb_000366_020 Hb_056012_020--Hb_000366_020 Hb_008447_030 Hb_008447_030 Hb_056012_020--Hb_008447_030 Hb_034359_010 Hb_034359_010 Hb_056012_020--Hb_034359_010 Hb_001821_130 Hb_001821_130 Hb_133385_010--Hb_001821_130 Hb_155256_020 Hb_155256_020 Hb_133385_010--Hb_155256_020 Hb_002805_130 Hb_002805_130 Hb_133385_010--Hb_002805_130 Hb_006132_020 Hb_006132_020 Hb_133385_010--Hb_006132_020 Hb_001625_030 Hb_001625_030 Hb_133385_010--Hb_001625_030 Hb_007234_010 Hb_007234_010 Hb_133385_010--Hb_007234_010 Hb_004724_230 Hb_004724_230 Hb_001660_020--Hb_004724_230 Hb_001660_020--Hb_184520_010 Hb_006268_020 Hb_006268_020 Hb_001660_020--Hb_006268_020 Hb_000422_120 Hb_000422_120 Hb_001660_020--Hb_000422_120 Hb_055101_010 Hb_055101_010 Hb_001660_020--Hb_055101_010 Hb_001660_020--Hb_007064_010 Hb_142343_010 Hb_142343_010 Hb_164096_010--Hb_142343_010 Hb_163975_010 Hb_163975_010 Hb_164096_010--Hb_163975_010 Hb_008447_040 Hb_008447_040 Hb_164096_010--Hb_008447_040 Hb_038564_010 Hb_038564_010 Hb_164096_010--Hb_038564_010 Hb_012627_020 Hb_012627_020 Hb_164096_010--Hb_012627_020 Hb_098315_080 Hb_098315_080 Hb_164096_010--Hb_098315_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.161419 0.0307887 0.0391786 0 0.203816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0884677 0 0.123144 0.2554 0.136403

CAGE analysis