Hb_003805_060

Information

Type -
Description -
Location Contig3805: 98657-99714
Sequence    

Annotation

kegg
ID rcu:RCOM_0599950
description protein binding protein, putative
nr
ID XP_002527141.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMC2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0599950 PE=4 SV=1
Gene Ontology
ID GO:0009506
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38581: 81325-99047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003805_060 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_134279_010 0.196577887 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
3 Hb_012338_030 0.2102925348 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001912_080 0.2168563098 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
5 Hb_004244_010 0.2181099377 - - hypothetical protein JCGZ_06191 [Jatropha curcas]
6 Hb_003805_070 0.2324650997 - - PREDICTED: sacsin [Jatropha curcas]
7 Hb_000940_170 0.2353051771 - - hypothetical protein VITISV_029834 [Vitis vinifera]
8 Hb_000959_090 0.2453726404 - - conserved hypothetical protein [Ricinus communis]
9 Hb_167977_010 0.2469205873 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
10 Hb_003604_030 0.2497857997 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
11 Hb_005892_020 0.2509219806 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
12 Hb_000062_450 0.2531010651 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
13 Hb_174473_010 0.2546105068 - - PREDICTED: uncharacterized protein LOC105775505 [Gossypium raimondii]
14 Hb_012788_010 0.2550643036 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_001631_100 0.2559692824 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_113203_010 0.2572232504 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_184520_010 0.2582446005 - - Disease resistance protein RPS5, putative [Ricinus communis]
18 Hb_003471_020 0.2591554623 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Jatropha curcas]
19 Hb_183443_010 0.2601047716 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_028912_040 0.2627462376 - - hypothetical protein POPTR_0016s03250g [Populus trichocarpa]

Gene co-expression network

sample Hb_003805_060 Hb_003805_060 Hb_134279_010 Hb_134279_010 Hb_003805_060--Hb_134279_010 Hb_012338_030 Hb_012338_030 Hb_003805_060--Hb_012338_030 Hb_001912_080 Hb_001912_080 Hb_003805_060--Hb_001912_080 Hb_004244_010 Hb_004244_010 Hb_003805_060--Hb_004244_010 Hb_003805_070 Hb_003805_070 Hb_003805_060--Hb_003805_070 Hb_000940_170 Hb_000940_170 Hb_003805_060--Hb_000940_170 Hb_003895_040 Hb_003895_040 Hb_134279_010--Hb_003895_040 Hb_000679_210 Hb_000679_210 Hb_134279_010--Hb_000679_210 Hb_015183_080 Hb_015183_080 Hb_134279_010--Hb_015183_080 Hb_014497_020 Hb_014497_020 Hb_134279_010--Hb_014497_020 Hb_000512_030 Hb_000512_030 Hb_134279_010--Hb_000512_030 Hb_003604_030 Hb_003604_030 Hb_134279_010--Hb_003604_030 Hb_146339_010 Hb_146339_010 Hb_012338_030--Hb_146339_010 Hb_000959_090 Hb_000959_090 Hb_012338_030--Hb_000959_090 Hb_012338_030--Hb_001912_080 Hb_012338_030--Hb_003805_070 Hb_000711_020 Hb_000711_020 Hb_012338_030--Hb_000711_020 Hb_001912_080--Hb_000959_090 Hb_000062_450 Hb_000062_450 Hb_001912_080--Hb_000062_450 Hb_000136_040 Hb_000136_040 Hb_001912_080--Hb_000136_040 Hb_009270_010 Hb_009270_010 Hb_001912_080--Hb_009270_010 Hb_003206_020 Hb_003206_020 Hb_001912_080--Hb_003206_020 Hb_020665_010 Hb_020665_010 Hb_001912_080--Hb_020665_010 Hb_002154_070 Hb_002154_070 Hb_004244_010--Hb_002154_070 Hb_002518_110 Hb_002518_110 Hb_004244_010--Hb_002518_110 Hb_000424_150 Hb_000424_150 Hb_004244_010--Hb_000424_150 Hb_028912_040 Hb_028912_040 Hb_004244_010--Hb_028912_040 Hb_032920_100 Hb_032920_100 Hb_004244_010--Hb_032920_100 Hb_006452_240 Hb_006452_240 Hb_003805_070--Hb_006452_240 Hb_005523_010 Hb_005523_010 Hb_003805_070--Hb_005523_010 Hb_148593_010 Hb_148593_010 Hb_003805_070--Hb_148593_010 Hb_011616_020 Hb_011616_020 Hb_003805_070--Hb_011616_020 Hb_099270_030 Hb_099270_030 Hb_003805_070--Hb_099270_030 Hb_003805_070--Hb_001912_080 Hb_005892_020 Hb_005892_020 Hb_000940_170--Hb_005892_020 Hb_003058_200 Hb_003058_200 Hb_000940_170--Hb_003058_200 Hb_000800_110 Hb_000800_110 Hb_000940_170--Hb_000800_110 Hb_021297_020 Hb_021297_020 Hb_000940_170--Hb_021297_020 Hb_169586_010 Hb_169586_010 Hb_000940_170--Hb_169586_010 Hb_002851_010 Hb_002851_010 Hb_000940_170--Hb_002851_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15986 2.01112 0.162613 2.233 1.80365 4.02757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.129107 2.34111 3.42668 3.98336

CAGE analysis