Hb_002805_130

Information

Type -
Description -
Location Contig2805: 117773-120749
Sequence    

Annotation

kegg
ID rcu:RCOM_0833080
description hypothetical protein
nr
ID XP_002527040.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q55EZ4
description Integrator complex subunit 3 homolog OS=Dictyostelium discoideum GN=ints3 PE=3 SV=1
trembl
ID B9SM21
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0833080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002805_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000189_100 0.1749877338 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
3 Hb_000540_110 0.1803359047 - - hypothetical protein PRUPE_ppa000777mg [Prunus persica]
4 Hb_007234_010 0.185133052 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
5 Hb_000940_160 0.1868733843 - - hypothetical protein VITISV_017596 [Vitis vinifera]
6 Hb_004228_020 0.1884614307 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
7 Hb_007818_020 0.1884752358 - - predicted protein [Physcomitrella patens]
8 Hb_014834_060 0.189406828 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
9 Hb_010874_040 0.192360223 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
10 Hb_040255_010 0.1932786476 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
11 Hb_003506_070 0.1961591668 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
12 Hb_003060_090 0.1966517228 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
13 Hb_000061_510 0.200132738 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
14 Hb_007064_010 0.2015142204 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
15 Hb_000574_420 0.2032692527 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
16 Hb_000123_350 0.203595074 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
17 Hb_000869_030 0.2053010887 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR5 isoform X1 [Jatropha curcas]
18 Hb_001525_010 0.2057053669 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
19 Hb_000327_280 0.2068490926 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
20 Hb_000080_170 0.2071581493 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002805_130 Hb_002805_130 Hb_000189_100 Hb_000189_100 Hb_002805_130--Hb_000189_100 Hb_000540_110 Hb_000540_110 Hb_002805_130--Hb_000540_110 Hb_007234_010 Hb_007234_010 Hb_002805_130--Hb_007234_010 Hb_000940_160 Hb_000940_160 Hb_002805_130--Hb_000940_160 Hb_004228_020 Hb_004228_020 Hb_002805_130--Hb_004228_020 Hb_007818_020 Hb_007818_020 Hb_002805_130--Hb_007818_020 Hb_006663_040 Hb_006663_040 Hb_000189_100--Hb_006663_040 Hb_000327_280 Hb_000327_280 Hb_000189_100--Hb_000327_280 Hb_018133_050 Hb_018133_050 Hb_000189_100--Hb_018133_050 Hb_000832_320 Hb_000832_320 Hb_000189_100--Hb_000832_320 Hb_052764_060 Hb_052764_060 Hb_000189_100--Hb_052764_060 Hb_000061_510 Hb_000061_510 Hb_000189_100--Hb_000061_510 Hb_003506_070 Hb_003506_070 Hb_000540_110--Hb_003506_070 Hb_125126_010 Hb_125126_010 Hb_000540_110--Hb_125126_010 Hb_000130_280 Hb_000130_280 Hb_000540_110--Hb_000130_280 Hb_001525_010 Hb_001525_010 Hb_000540_110--Hb_001525_010 Hb_014834_060 Hb_014834_060 Hb_000540_110--Hb_014834_060 Hb_010712_040 Hb_010712_040 Hb_000540_110--Hb_010712_040 Hb_004204_010 Hb_004204_010 Hb_007234_010--Hb_004204_010 Hb_029243_020 Hb_029243_020 Hb_007234_010--Hb_029243_020 Hb_003047_020 Hb_003047_020 Hb_007234_010--Hb_003047_020 Hb_008053_040 Hb_008053_040 Hb_007234_010--Hb_008053_040 Hb_015183_080 Hb_015183_080 Hb_007234_010--Hb_015183_080 Hb_001488_180 Hb_001488_180 Hb_007234_010--Hb_001488_180 Hb_011791_020 Hb_011791_020 Hb_000940_160--Hb_011791_020 Hb_000117_070 Hb_000117_070 Hb_000940_160--Hb_000117_070 Hb_002942_110 Hb_002942_110 Hb_000940_160--Hb_002942_110 Hb_143986_010 Hb_143986_010 Hb_000940_160--Hb_143986_010 Hb_020178_050 Hb_020178_050 Hb_000940_160--Hb_020178_050 Hb_120470_010 Hb_120470_010 Hb_000940_160--Hb_120470_010 Hb_001268_380 Hb_001268_380 Hb_004228_020--Hb_001268_380 Hb_000321_150 Hb_000321_150 Hb_004228_020--Hb_000321_150 Hb_001967_030 Hb_001967_030 Hb_004228_020--Hb_001967_030 Hb_000977_120 Hb_000977_120 Hb_004228_020--Hb_000977_120 Hb_005539_090 Hb_005539_090 Hb_004228_020--Hb_005539_090 Hb_006117_080 Hb_006117_080 Hb_004228_020--Hb_006117_080 Hb_007818_020--Hb_004228_020 Hb_007818_020--Hb_006663_040 Hb_007818_020--Hb_052764_060 Hb_007818_020--Hb_000832_320 Hb_007818_020--Hb_000189_100 Hb_007818_020--Hb_001268_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107863 0.560114 0.102849 0.0486624 0.0812234 0.323526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0344979 0.0271462 0.207097 0.107781 0.173193

CAGE analysis