Hb_007234_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig7234: 28152-29291
Sequence    

Annotation

kegg
ID pop:POPTR_0005s07900g
description POPTRDRAFT_558553; hypothetical protein
nr
ID XP_012093083.1
description PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
swissprot
ID Q8H1E4
description Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=1 SV=1
trembl
ID A0A067LEQ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24071 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55791: 27618-28490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007234_010 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
2 Hb_004204_010 0.0956877772 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
3 Hb_029243_020 0.1057565444 - - ENTH/VHS/GAT family protein [Theobroma cacao]
4 Hb_003047_020 0.1065624333 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
5 Hb_008053_040 0.1080582734 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
6 Hb_015183_080 0.1084817572 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_001488_180 0.1085855479 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
8 Hb_000347_390 0.1147618594 - - PREDICTED: exportin-T [Jatropha curcas]
9 Hb_000661_130 0.114873458 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
10 Hb_001629_060 0.1172386074 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
11 Hb_003014_030 0.1175219939 - - PREDICTED: thyroid adenoma-associated protein homolog [Jatropha curcas]
12 Hb_007575_080 0.1175222119 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
13 Hb_005977_070 0.1189128488 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
14 Hb_002780_010 0.1194155234 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
15 Hb_000170_130 0.1195030153 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
16 Hb_000103_390 0.119665781 - - Pentatricopeptide repeat superfamily protein [Theobroma cacao]
17 Hb_005408_030 0.1204096172 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
18 Hb_001405_160 0.1220860369 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g09680 [Jatropha curcas]
19 Hb_012490_010 0.122572627 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_024185_010 0.1231811062 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007234_010 Hb_007234_010 Hb_004204_010 Hb_004204_010 Hb_007234_010--Hb_004204_010 Hb_029243_020 Hb_029243_020 Hb_007234_010--Hb_029243_020 Hb_003047_020 Hb_003047_020 Hb_007234_010--Hb_003047_020 Hb_008053_040 Hb_008053_040 Hb_007234_010--Hb_008053_040 Hb_015183_080 Hb_015183_080 Hb_007234_010--Hb_015183_080 Hb_001488_180 Hb_001488_180 Hb_007234_010--Hb_001488_180 Hb_005977_070 Hb_005977_070 Hb_004204_010--Hb_005977_070 Hb_004204_010--Hb_001488_180 Hb_005408_030 Hb_005408_030 Hb_004204_010--Hb_005408_030 Hb_004705_020 Hb_004705_020 Hb_004204_010--Hb_004705_020 Hb_009658_030 Hb_009658_030 Hb_004204_010--Hb_009658_030 Hb_011021_050 Hb_011021_050 Hb_004204_010--Hb_011021_050 Hb_003014_030 Hb_003014_030 Hb_029243_020--Hb_003014_030 Hb_029243_020--Hb_004705_020 Hb_000009_410 Hb_000009_410 Hb_029243_020--Hb_000009_410 Hb_029243_020--Hb_004204_010 Hb_000656_060 Hb_000656_060 Hb_029243_020--Hb_000656_060 Hb_029243_020--Hb_003047_020 Hb_021596_010 Hb_021596_010 Hb_003047_020--Hb_021596_010 Hb_000003_410 Hb_000003_410 Hb_003047_020--Hb_000003_410 Hb_020805_150 Hb_020805_150 Hb_003047_020--Hb_020805_150 Hb_000703_200 Hb_000703_200 Hb_003047_020--Hb_000703_200 Hb_012490_010 Hb_012490_010 Hb_003047_020--Hb_012490_010 Hb_009302_030 Hb_009302_030 Hb_003047_020--Hb_009302_030 Hb_007575_080 Hb_007575_080 Hb_008053_040--Hb_007575_080 Hb_003805_040 Hb_003805_040 Hb_008053_040--Hb_003805_040 Hb_005186_040 Hb_005186_040 Hb_008053_040--Hb_005186_040 Hb_002521_020 Hb_002521_020 Hb_008053_040--Hb_002521_020 Hb_000665_230 Hb_000665_230 Hb_008053_040--Hb_000665_230 Hb_024185_010 Hb_024185_010 Hb_008053_040--Hb_024185_010 Hb_015183_080--Hb_002521_020 Hb_015183_080--Hb_003014_030 Hb_000445_130 Hb_000445_130 Hb_015183_080--Hb_000445_130 Hb_001054_120 Hb_001054_120 Hb_015183_080--Hb_001054_120 Hb_000367_020 Hb_000367_020 Hb_015183_080--Hb_000367_020 Hb_001124_050 Hb_001124_050 Hb_015183_080--Hb_001124_050 Hb_001473_110 Hb_001473_110 Hb_001488_180--Hb_001473_110 Hb_000028_130 Hb_000028_130 Hb_001488_180--Hb_000028_130 Hb_000479_070 Hb_000479_070 Hb_001488_180--Hb_000479_070 Hb_010712_050 Hb_010712_050 Hb_001488_180--Hb_010712_050 Hb_000017_220 Hb_000017_220 Hb_001488_180--Hb_000017_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5072 118.717 34.3013 36.7187 19.0027 54.5376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.621 28.0028 51.1955 41.1039 73.4

CAGE analysis