Hb_155256_020

Information

Type -
Description -
Location Contig155256: 596-857
Sequence    

Annotation

kegg
ID cic:CICLE_v10024285mg
description hypothetical protein
nr
ID KDP42425.1
description hypothetical protein JCGZ_00222 [Jatropha curcas]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A067LD49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00222 PE=4 SV=1
Gene Ontology
ID GO:0032550
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155256_020 0.0 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
2 Hb_133385_010 0.2286922087 - - -
3 Hb_002805_130 0.3101456475 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005137_030 0.3260274918 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001821_130 0.3328235514 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
6 Hb_010874_040 0.3330970038 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
7 Hb_001999_280 0.3334763675 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_177020_010 0.3372610407 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
9 Hb_001157_100 0.3374394543 - - PREDICTED: uncharacterized protein LOC104887185 [Beta vulgaris subsp. vulgaris]
10 Hb_001780_090 0.3374967722 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
11 Hb_088176_010 0.3411497255 - - -
12 Hb_002233_020 0.3436357492 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
13 Hb_001625_030 0.3450112571 - - hypothetical protein JCGZ_20707 [Jatropha curcas]
14 Hb_001912_070 0.3460682015 - - hypothetical protein POPTR_0003s03380g [Populus trichocarpa]
15 Hb_005375_040 0.3521041345 - - dicer-1, putative [Ricinus communis]
16 Hb_143489_020 0.3543559518 - - -
17 Hb_007021_030 0.3548337523 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003106_030 0.3554675166 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
19 Hb_000649_010 0.3571333031 - - PREDICTED: adagio protein 3 [Jatropha curcas]
20 Hb_141212_010 0.3579573786 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_155256_020 Hb_155256_020 Hb_133385_010 Hb_133385_010 Hb_155256_020--Hb_133385_010 Hb_002805_130 Hb_002805_130 Hb_155256_020--Hb_002805_130 Hb_005137_030 Hb_005137_030 Hb_155256_020--Hb_005137_030 Hb_001821_130 Hb_001821_130 Hb_155256_020--Hb_001821_130 Hb_010874_040 Hb_010874_040 Hb_155256_020--Hb_010874_040 Hb_001999_280 Hb_001999_280 Hb_155256_020--Hb_001999_280 Hb_133385_010--Hb_001821_130 Hb_133385_010--Hb_002805_130 Hb_006132_020 Hb_006132_020 Hb_133385_010--Hb_006132_020 Hb_001625_030 Hb_001625_030 Hb_133385_010--Hb_001625_030 Hb_007234_010 Hb_007234_010 Hb_133385_010--Hb_007234_010 Hb_000189_100 Hb_000189_100 Hb_002805_130--Hb_000189_100 Hb_000540_110 Hb_000540_110 Hb_002805_130--Hb_000540_110 Hb_002805_130--Hb_007234_010 Hb_000940_160 Hb_000940_160 Hb_002805_130--Hb_000940_160 Hb_004228_020 Hb_004228_020 Hb_002805_130--Hb_004228_020 Hb_007818_020 Hb_007818_020 Hb_002805_130--Hb_007818_020 Hb_011798_030 Hb_011798_030 Hb_005137_030--Hb_011798_030 Hb_184520_010 Hb_184520_010 Hb_005137_030--Hb_184520_010 Hb_005137_030--Hb_133385_010 Hb_000105_030 Hb_000105_030 Hb_005137_030--Hb_000105_030 Hb_005137_030--Hb_000940_160 Hb_053125_010 Hb_053125_010 Hb_005137_030--Hb_053125_010 Hb_002960_080 Hb_002960_080 Hb_001821_130--Hb_002960_080 Hb_006117_080 Hb_006117_080 Hb_001821_130--Hb_006117_080 Hb_000321_150 Hb_000321_150 Hb_001821_130--Hb_000321_150 Hb_007575_080 Hb_007575_080 Hb_001821_130--Hb_007575_080 Hb_000661_130 Hb_000661_130 Hb_001821_130--Hb_000661_130 Hb_043362_010 Hb_043362_010 Hb_001821_130--Hb_043362_010 Hb_010874_040--Hb_004228_020 Hb_009898_010 Hb_009898_010 Hb_010874_040--Hb_009898_010 Hb_001268_380 Hb_001268_380 Hb_010874_040--Hb_001268_380 Hb_005486_030 Hb_005486_030 Hb_010874_040--Hb_005486_030 Hb_011716_030 Hb_011716_030 Hb_010874_040--Hb_011716_030 Hb_002780_010 Hb_002780_010 Hb_010874_040--Hb_002780_010 Hb_000080_170 Hb_000080_170 Hb_001999_280--Hb_000080_170 Hb_000162_020 Hb_000162_020 Hb_001999_280--Hb_000162_020 Hb_003106_030 Hb_003106_030 Hb_001999_280--Hb_003106_030 Hb_003994_100 Hb_003994_100 Hb_001999_280--Hb_003994_100 Hb_002084_040 Hb_002084_040 Hb_001999_280--Hb_002084_040 Hb_000181_360 Hb_000181_360 Hb_001999_280--Hb_000181_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.59975 0.477852 0 0.488027 2.84119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.08439 0 0.563461 0.602498 1.21199

CAGE analysis