Hb_002084_040

Information

Type -
Description -
Location Contig2084: 63986-78917
Sequence    

Annotation

kegg
ID rcu:RCOM_1406230
description DNA-directed RNA polymerase 3B, chloroplast precursor, putative
nr
ID XP_012071554.1
description PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
swissprot
ID O24600
description DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
trembl
ID B9SQY6
description DNA-directed RNA polymerase 3B, chloroplast, putative OS=Ricinus communis GN=RCOM_1406230 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dna-directed rna polymerase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21584: 49849-64346 , PASA_asmbl_21585: 66986-70068 , PASA_asmbl_21586: 75142-78441
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002084_040 0.0 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
2 Hb_001811_120 0.0816873706 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
3 Hb_014497_090 0.1021451151 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
4 Hb_000363_380 0.1043762792 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
5 Hb_007904_180 0.1086554996 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Jatropha curcas]
6 Hb_000475_020 0.109917511 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
7 Hb_000096_180 0.116103357 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_000832_300 0.1167466298 - - -
9 Hb_000640_200 0.1181529446 - - hypothetical protein RCOM_1346600 [Ricinus communis]
10 Hb_000487_220 0.1181623305 - - eukaryotic translation elongation factor, putative [Ricinus communis]
11 Hb_000250_070 0.1182710316 - - PREDICTED: E3 ubiquitin-protein ligase listerin [Jatropha curcas]
12 Hb_002188_090 0.1185459888 - - PREDICTED: pre-mRNA-processing protein 40A isoform X1 [Jatropha curcas]
13 Hb_027073_060 0.1189656179 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
14 Hb_000504_150 0.1190200999 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
15 Hb_002471_210 0.1220701013 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
16 Hb_001196_060 0.1221217783 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
17 Hb_000347_570 0.1302335347 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
18 Hb_003029_130 0.1305661932 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
19 Hb_002291_070 0.1311862417 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
20 Hb_004037_030 0.1334287223 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002084_040 Hb_002084_040 Hb_001811_120 Hb_001811_120 Hb_002084_040--Hb_001811_120 Hb_014497_090 Hb_014497_090 Hb_002084_040--Hb_014497_090 Hb_000363_380 Hb_000363_380 Hb_002084_040--Hb_000363_380 Hb_007904_180 Hb_007904_180 Hb_002084_040--Hb_007904_180 Hb_000475_020 Hb_000475_020 Hb_002084_040--Hb_000475_020 Hb_000096_180 Hb_000096_180 Hb_002084_040--Hb_000096_180 Hb_001811_120--Hb_000475_020 Hb_002471_210 Hb_002471_210 Hb_001811_120--Hb_002471_210 Hb_000487_220 Hb_000487_220 Hb_001811_120--Hb_000487_220 Hb_000250_070 Hb_000250_070 Hb_001811_120--Hb_000250_070 Hb_001811_120--Hb_007904_180 Hb_002291_070 Hb_002291_070 Hb_001811_120--Hb_002291_070 Hb_002524_040 Hb_002524_040 Hb_014497_090--Hb_002524_040 Hb_004543_030 Hb_004543_030 Hb_014497_090--Hb_004543_030 Hb_000832_300 Hb_000832_300 Hb_014497_090--Hb_000832_300 Hb_034243_020 Hb_034243_020 Hb_014497_090--Hb_034243_020 Hb_004884_010 Hb_004884_010 Hb_014497_090--Hb_004884_010 Hb_008246_030 Hb_008246_030 Hb_000363_380--Hb_008246_030 Hb_017895_020 Hb_017895_020 Hb_000363_380--Hb_017895_020 Hb_028872_120 Hb_028872_120 Hb_000363_380--Hb_028872_120 Hb_003029_130 Hb_003029_130 Hb_000363_380--Hb_003029_130 Hb_001178_150 Hb_001178_150 Hb_000363_380--Hb_001178_150 Hb_000363_380--Hb_000487_220 Hb_004037_030 Hb_004037_030 Hb_007904_180--Hb_004037_030 Hb_007904_180--Hb_000475_020 Hb_000002_440 Hb_000002_440 Hb_007904_180--Hb_000002_440 Hb_000813_100 Hb_000813_100 Hb_007904_180--Hb_000813_100 Hb_006816_300 Hb_006816_300 Hb_007904_180--Hb_006816_300 Hb_000475_020--Hb_002471_210 Hb_000475_020--Hb_000250_070 Hb_007849_020 Hb_007849_020 Hb_000475_020--Hb_007849_020 Hb_000475_020--Hb_002291_070 Hb_147737_010 Hb_147737_010 Hb_000475_020--Hb_147737_010 Hb_027073_060 Hb_027073_060 Hb_000096_180--Hb_027073_060 Hb_025477_060 Hb_025477_060 Hb_000096_180--Hb_025477_060 Hb_000096_180--Hb_002291_070 Hb_002043_170 Hb_002043_170 Hb_000096_180--Hb_002043_170 Hb_001437_100 Hb_001437_100 Hb_000096_180--Hb_001437_100 Hb_000096_180--Hb_000002_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8258 10.616 3.25203 1.58702 11.9619 16.8812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.28195 1.96088 2.23979 3.56714 7.79986

CAGE analysis