Hb_014497_090

Information

Type -
Description -
Location Contig14497: 65937-71457
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G037900g
description hypothetical protein
nr
ID XP_007157031.1
description hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
swissprot
ID Q8H0U8
description DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2
trembl
ID V7CJE2
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G037900g PE=3 SV=1
Gene Ontology
ID GO:0000166
description dead-box atp-dependent rna helicase 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11702: 69445-69663 , PASA_asmbl_11703: 69665-71010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_090 0.0 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]
2 Hb_002524_040 0.0945005234 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
3 Hb_004543_030 0.0958005275 - - PREDICTED: FIP1[V]-like protein [Jatropha curcas]
4 Hb_000832_300 0.1019136949 - - -
5 Hb_002084_040 0.1021451151 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
6 Hb_034243_020 0.1076323735 - - PREDICTED: elongator complex protein 1 isoform X1 [Jatropha curcas]
7 Hb_004884_010 0.1112821766 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Jatropha curcas]
8 Hb_007576_120 0.1118522392 - - NBS-LRR disease resistance protein NBS49 [Dimocarpus longan]
9 Hb_000012_140 0.1119567223 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002291_070 0.1138177715 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
11 Hb_003994_100 0.1150225321 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
12 Hb_000041_090 0.1154779135 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
13 Hb_010315_090 0.1171831176 - - suppressor of ty, putative [Ricinus communis]
14 Hb_001811_120 0.1220768822 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
15 Hb_001493_040 0.122842052 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
16 Hb_161072_030 0.1228625234 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]
17 Hb_002471_210 0.1269185746 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
18 Hb_000080_170 0.1269264324 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
19 Hb_000011_210 0.1280131862 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
20 Hb_000139_090 0.128310335 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_014497_090 Hb_014497_090 Hb_002524_040 Hb_002524_040 Hb_014497_090--Hb_002524_040 Hb_004543_030 Hb_004543_030 Hb_014497_090--Hb_004543_030 Hb_000832_300 Hb_000832_300 Hb_014497_090--Hb_000832_300 Hb_002084_040 Hb_002084_040 Hb_014497_090--Hb_002084_040 Hb_034243_020 Hb_034243_020 Hb_014497_090--Hb_034243_020 Hb_004884_010 Hb_004884_010 Hb_014497_090--Hb_004884_010 Hb_002524_040--Hb_004543_030 Hb_000139_090 Hb_000139_090 Hb_002524_040--Hb_000139_090 Hb_007576_120 Hb_007576_120 Hb_002524_040--Hb_007576_120 Hb_030565_090 Hb_030565_090 Hb_002524_040--Hb_030565_090 Hb_001247_070 Hb_001247_070 Hb_002524_040--Hb_001247_070 Hb_002524_040--Hb_034243_020 Hb_004543_030--Hb_034243_020 Hb_004543_030--Hb_007576_120 Hb_004718_010 Hb_004718_010 Hb_004543_030--Hb_004718_010 Hb_000997_030 Hb_000997_030 Hb_004543_030--Hb_000997_030 Hb_010315_090 Hb_010315_090 Hb_004543_030--Hb_010315_090 Hb_002291_070 Hb_002291_070 Hb_000832_300--Hb_002291_070 Hb_000096_180 Hb_000096_180 Hb_000832_300--Hb_000096_180 Hb_002471_210 Hb_002471_210 Hb_000832_300--Hb_002471_210 Hb_001811_120 Hb_001811_120 Hb_000832_300--Hb_001811_120 Hb_027073_060 Hb_027073_060 Hb_000832_300--Hb_027073_060 Hb_002084_040--Hb_001811_120 Hb_000363_380 Hb_000363_380 Hb_002084_040--Hb_000363_380 Hb_007904_180 Hb_007904_180 Hb_002084_040--Hb_007904_180 Hb_000475_020 Hb_000475_020 Hb_002084_040--Hb_000475_020 Hb_002084_040--Hb_000096_180 Hb_034243_020--Hb_004884_010 Hb_001493_040 Hb_001493_040 Hb_034243_020--Hb_001493_040 Hb_034243_020--Hb_007576_120 Hb_034243_020--Hb_010315_090 Hb_133047_010 Hb_133047_010 Hb_034243_020--Hb_133047_010 Hb_004884_010--Hb_133047_010 Hb_004884_010--Hb_010315_090 Hb_002022_070 Hb_002022_070 Hb_004884_010--Hb_002022_070 Hb_148909_030 Hb_148909_030 Hb_004884_010--Hb_148909_030 Hb_004884_010--Hb_004543_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42427 4.78546 1.23329 0.646571 4.47218 5.17122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71061 1.26889 1.54162 2.08712 4.3813

CAGE analysis