Hb_001999_280

Information

Type -
Description -
Location Contig1999: 231557-235449
Sequence    

Annotation

kegg
ID rcu:RCOM_0611460
description catalytic, putative
nr
ID XP_012068014.1
description PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID O82392
description Phosphomethylpyrimidine synthase, chloroplastic OS=Arabidopsis thaliana GN=THIC PE=1 SV=1
trembl
ID A0A067LDP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08499 PE=3 SV=1
Gene Ontology
ID GO:0051536
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20049: 231768-235477 , PASA_asmbl_20050: 231655-235254
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001999_280 0.0 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_000080_170 0.1201915853 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
3 Hb_000162_020 0.1322607165 - - protein translocase, putative [Ricinus communis]
4 Hb_003106_030 0.1461111058 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
5 Hb_003994_100 0.1476651852 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
6 Hb_002084_040 0.1572738081 - - PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Jatropha curcas]
7 Hb_000181_360 0.1592183573 - - PREDICTED: uncharacterized protein LOC105644273 [Jatropha curcas]
8 Hb_002762_130 0.1603455479 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
9 Hb_000265_250 0.1647122834 - - auxilin, putative [Ricinus communis]
10 Hb_000574_510 0.1664693869 - - protein kinase, putative [Ricinus communis]
11 Hb_001511_110 0.169643014 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
12 Hb_000808_070 0.1697630704 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
13 Hb_000197_290 0.1703626013 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
14 Hb_000832_320 0.1728891448 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_006185_020 0.1731500835 - - PREDICTED: midasin [Jatropha curcas]
16 Hb_015475_020 0.1731773827 - - importin beta-1, putative [Ricinus communis]
17 Hb_011798_040 0.1748719744 - - hypothetical protein ZEAMMB73_778895 [Zea mays]
18 Hb_026198_040 0.1749337506 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
19 Hb_000189_100 0.1755590234 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
20 Hb_014497_090 0.1772219441 - - hypothetical protein PHAVU_002G037900g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_001999_280 Hb_001999_280 Hb_000080_170 Hb_000080_170 Hb_001999_280--Hb_000080_170 Hb_000162_020 Hb_000162_020 Hb_001999_280--Hb_000162_020 Hb_003106_030 Hb_003106_030 Hb_001999_280--Hb_003106_030 Hb_003994_100 Hb_003994_100 Hb_001999_280--Hb_003994_100 Hb_002084_040 Hb_002084_040 Hb_001999_280--Hb_002084_040 Hb_000181_360 Hb_000181_360 Hb_001999_280--Hb_000181_360 Hb_000080_170--Hb_003994_100 Hb_000832_320 Hb_000832_320 Hb_000080_170--Hb_000832_320 Hb_006663_040 Hb_006663_040 Hb_000080_170--Hb_006663_040 Hb_004543_030 Hb_004543_030 Hb_000080_170--Hb_004543_030 Hb_018133_050 Hb_018133_050 Hb_000080_170--Hb_018133_050 Hb_015475_020 Hb_015475_020 Hb_000080_170--Hb_015475_020 Hb_002762_130 Hb_002762_130 Hb_000162_020--Hb_002762_130 Hb_000162_020--Hb_003106_030 Hb_000162_020--Hb_003994_100 Hb_000061_510 Hb_000061_510 Hb_000162_020--Hb_000061_510 Hb_000406_020 Hb_000406_020 Hb_000162_020--Hb_000406_020 Hb_005214_150 Hb_005214_150 Hb_000162_020--Hb_005214_150 Hb_005104_010 Hb_005104_010 Hb_003106_030--Hb_005104_010 Hb_003106_030--Hb_002762_130 Hb_000345_150 Hb_000345_150 Hb_003106_030--Hb_000345_150 Hb_000836_020 Hb_000836_020 Hb_003106_030--Hb_000836_020 Hb_010712_040 Hb_010712_040 Hb_003106_030--Hb_010712_040 Hb_002784_010 Hb_002784_010 Hb_003106_030--Hb_002784_010 Hb_005539_090 Hb_005539_090 Hb_003994_100--Hb_005539_090 Hb_003994_100--Hb_000345_150 Hb_000012_140 Hb_000012_140 Hb_003994_100--Hb_000012_140 Hb_003994_100--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_003994_100--Hb_052764_060 Hb_001811_120 Hb_001811_120 Hb_002084_040--Hb_001811_120 Hb_014497_090 Hb_014497_090 Hb_002084_040--Hb_014497_090 Hb_000363_380 Hb_000363_380 Hb_002084_040--Hb_000363_380 Hb_007904_180 Hb_007904_180 Hb_002084_040--Hb_007904_180 Hb_000475_020 Hb_000475_020 Hb_002084_040--Hb_000475_020 Hb_000096_180 Hb_000096_180 Hb_002084_040--Hb_000096_180 Hb_001231_030 Hb_001231_030 Hb_000181_360--Hb_001231_030 Hb_000327_080 Hb_000327_080 Hb_000181_360--Hb_000327_080 Hb_004899_070 Hb_004899_070 Hb_000181_360--Hb_004899_070 Hb_000265_250 Hb_000265_250 Hb_000181_360--Hb_000265_250 Hb_000062_470 Hb_000062_470 Hb_000181_360--Hb_000062_470 Hb_000753_100 Hb_000753_100 Hb_000181_360--Hb_000753_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.9608 87.4409 10.6438 7.4349 39.5868 58.2508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4152 3.72003 7.97906 16.1957 35.0723

CAGE analysis