Hb_011798_030

Information

Type -
Description -
Location Contig11798: 16684-18568
Sequence    

Annotation

kegg
ID tcc:TCM_041726
description Ankyrin repeat family protein
nr
ID XP_002274771.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Vitis vinifera]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A061GZZ3
description Ankyrin repeat family protein OS=Theobroma cacao GN=TCM_041726 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05419: 18326-18499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011798_030 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Vitis vinifera]
2 Hb_122273_020 0.2082518006 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
3 Hb_118157_010 0.2124116319 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
4 Hb_000345_330 0.214533111 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
5 Hb_003895_040 0.2189044137 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
6 Hb_000940_160 0.2234028981 - - hypothetical protein VITISV_017596 [Vitis vinifera]
7 Hb_005754_030 0.2256879719 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
8 Hb_002851_080 0.2265004971 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
9 Hb_000105_030 0.2279726511 - - fkbp-rapamycin associated protein, putative [Ricinus communis]
10 Hb_143986_010 0.2297066349 - - PREDICTED: beta-galactosidase [Jatropha curcas]
11 Hb_014497_020 0.2297907984 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
12 Hb_007120_060 0.2299691849 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
13 Hb_001054_120 0.2311071275 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
14 Hb_011609_150 0.2331037594 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
15 Hb_000126_070 0.2336864636 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
16 Hb_015183_080 0.2336989977 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_000003_410 0.2339297979 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
18 Hb_000812_030 0.2344841376 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_120470_010 0.2345060317 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
20 Hb_001085_030 0.2348329365 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_011798_030 Hb_011798_030 Hb_122273_020 Hb_122273_020 Hb_011798_030--Hb_122273_020 Hb_118157_010 Hb_118157_010 Hb_011798_030--Hb_118157_010 Hb_000345_330 Hb_000345_330 Hb_011798_030--Hb_000345_330 Hb_003895_040 Hb_003895_040 Hb_011798_030--Hb_003895_040 Hb_000940_160 Hb_000940_160 Hb_011798_030--Hb_000940_160 Hb_005754_030 Hb_005754_030 Hb_011798_030--Hb_005754_030 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_014720_030 Hb_014720_030 Hb_122273_020--Hb_014720_030 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_002918_320 Hb_002918_320 Hb_122273_020--Hb_002918_320 Hb_004875_010 Hb_004875_010 Hb_122273_020--Hb_004875_010 Hb_000413_250 Hb_000413_250 Hb_122273_020--Hb_000413_250 Hb_118157_020 Hb_118157_020 Hb_118157_010--Hb_118157_020 Hb_000271_120 Hb_000271_120 Hb_118157_010--Hb_000271_120 Hb_000345_340 Hb_000345_340 Hb_118157_010--Hb_000345_340 Hb_004064_060 Hb_004064_060 Hb_118157_010--Hb_004064_060 Hb_003266_020 Hb_003266_020 Hb_118157_010--Hb_003266_020 Hb_000007_410 Hb_000007_410 Hb_118157_010--Hb_000007_410 Hb_001085_030 Hb_001085_030 Hb_000345_330--Hb_001085_030 Hb_014497_020 Hb_014497_020 Hb_000345_330--Hb_014497_020 Hb_065408_010 Hb_065408_010 Hb_000345_330--Hb_065408_010 Hb_007120_060 Hb_007120_060 Hb_000345_330--Hb_007120_060 Hb_011609_150 Hb_011609_150 Hb_000345_330--Hb_011609_150 Hb_000345_330--Hb_122273_020 Hb_003895_040--Hb_014497_020 Hb_003895_040--Hb_001054_120 Hb_000512_030 Hb_000512_030 Hb_003895_040--Hb_000512_030 Hb_007576_210 Hb_007576_210 Hb_003895_040--Hb_007576_210 Hb_001124_050 Hb_001124_050 Hb_003895_040--Hb_001124_050 Hb_003895_040--Hb_007120_060 Hb_011791_020 Hb_011791_020 Hb_000940_160--Hb_011791_020 Hb_000117_070 Hb_000117_070 Hb_000940_160--Hb_000117_070 Hb_002942_110 Hb_002942_110 Hb_000940_160--Hb_002942_110 Hb_143986_010 Hb_143986_010 Hb_000940_160--Hb_143986_010 Hb_020178_050 Hb_020178_050 Hb_000940_160--Hb_020178_050 Hb_120470_010 Hb_120470_010 Hb_000940_160--Hb_120470_010 Hb_001050_050 Hb_001050_050 Hb_005754_030--Hb_001050_050 Hb_002986_070 Hb_002986_070 Hb_005754_030--Hb_002986_070 Hb_007735_060 Hb_007735_060 Hb_005754_030--Hb_007735_060 Hb_002016_050 Hb_002016_050 Hb_005754_030--Hb_002016_050 Hb_015183_080 Hb_015183_080 Hb_005754_030--Hb_015183_080 Hb_007234_010 Hb_007234_010 Hb_005754_030--Hb_007234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.240418 1.33281 0.565079 0.110885 0.319019 0.674357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.382319 0.864451 1.17059

CAGE analysis