Hb_118157_020

Information

Type -
Description -
Location Contig118157: 10029-10583
Sequence    

Annotation

kegg
ID tcc:TCM_012147
description Galactose-1-phosphate uridylyltransferase, putative
nr
ID KEH33976.1
description hypothetical protein MTR_3g456110 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID M1BTH1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401020366 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118157_020 0.0 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
2 Hb_118157_010 0.1150735456 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
3 Hb_000406_190 0.1596584815 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_011853_010 0.1665467857 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
5 Hb_149515_010 0.1709709301 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
6 Hb_011909_010 0.1741505458 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
7 Hb_000866_110 0.1771804966 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
8 Hb_000007_410 0.1802096288 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
9 Hb_000271_120 0.1843886285 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
10 Hb_000404_040 0.1855184289 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006700_040 0.1862071608 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
12 Hb_004586_090 0.188473156 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
13 Hb_000527_070 0.1891672517 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
14 Hb_004064_060 0.1893295959 - - conserved hypothetical protein [Ricinus communis]
15 Hb_014006_010 0.1894467917 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_000205_250 0.1917112251 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
17 Hb_000340_220 0.194651023 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000649_180 0.1947511795 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
19 Hb_001006_010 0.1951978469 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_000804_020 0.1965767708 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_118157_020 Hb_118157_020 Hb_118157_010 Hb_118157_010 Hb_118157_020--Hb_118157_010 Hb_000406_190 Hb_000406_190 Hb_118157_020--Hb_000406_190 Hb_011853_010 Hb_011853_010 Hb_118157_020--Hb_011853_010 Hb_149515_010 Hb_149515_010 Hb_118157_020--Hb_149515_010 Hb_011909_010 Hb_011909_010 Hb_118157_020--Hb_011909_010 Hb_000866_110 Hb_000866_110 Hb_118157_020--Hb_000866_110 Hb_000271_120 Hb_000271_120 Hb_118157_010--Hb_000271_120 Hb_000345_340 Hb_000345_340 Hb_118157_010--Hb_000345_340 Hb_004064_060 Hb_004064_060 Hb_118157_010--Hb_004064_060 Hb_003266_020 Hb_003266_020 Hb_118157_010--Hb_003266_020 Hb_000007_410 Hb_000007_410 Hb_118157_010--Hb_000007_410 Hb_005695_080 Hb_005695_080 Hb_000406_190--Hb_005695_080 Hb_001080_030 Hb_001080_030 Hb_000406_190--Hb_001080_030 Hb_014006_010 Hb_014006_010 Hb_000406_190--Hb_014006_010 Hb_000032_020 Hb_000032_020 Hb_000406_190--Hb_000032_020 Hb_001865_010 Hb_001865_010 Hb_000406_190--Hb_001865_010 Hb_000731_290 Hb_000731_290 Hb_000406_190--Hb_000731_290 Hb_006700_040 Hb_006700_040 Hb_011853_010--Hb_006700_040 Hb_000227_330 Hb_000227_330 Hb_011853_010--Hb_000227_330 Hb_001235_130 Hb_001235_130 Hb_011853_010--Hb_001235_130 Hb_001307_200 Hb_001307_200 Hb_011853_010--Hb_001307_200 Hb_000922_260 Hb_000922_260 Hb_011853_010--Hb_000922_260 Hb_000125_180 Hb_000125_180 Hb_011853_010--Hb_000125_180 Hb_008145_010 Hb_008145_010 Hb_149515_010--Hb_008145_010 Hb_149515_010--Hb_011909_010 Hb_000649_180 Hb_000649_180 Hb_149515_010--Hb_000649_180 Hb_002291_020 Hb_002291_020 Hb_149515_010--Hb_002291_020 Hb_007919_040 Hb_007919_040 Hb_149515_010--Hb_007919_040 Hb_000141_010 Hb_000141_010 Hb_149515_010--Hb_000141_010 Hb_000345_320 Hb_000345_320 Hb_011909_010--Hb_000345_320 Hb_000317_350 Hb_000317_350 Hb_011909_010--Hb_000317_350 Hb_000209_100 Hb_000209_100 Hb_011909_010--Hb_000209_100 Hb_082741_010 Hb_082741_010 Hb_011909_010--Hb_082741_010 Hb_000205_250 Hb_000205_250 Hb_011909_010--Hb_000205_250 Hb_028811_010 Hb_028811_010 Hb_011909_010--Hb_028811_010 Hb_002235_310 Hb_002235_310 Hb_000866_110--Hb_002235_310 Hb_000866_110--Hb_000205_250 Hb_000866_110--Hb_000125_180 Hb_001006_010 Hb_001006_010 Hb_000866_110--Hb_001006_010 Hb_011925_020 Hb_011925_020 Hb_000866_110--Hb_011925_020 Hb_000866_110--Hb_000271_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03644 8.77767 7.27254 2.91725 0.52083 1.61531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02287 0.357224 4.78254 12.4789 11.4253

CAGE analysis