Hb_118157_010

Information

Type -
Description -
Location Contig118157: 3102-10841
Sequence    

Annotation

kegg
ID mdm:103419953
description ankyrin repeat-containing protein At5g02620-like
nr
ID XP_011020233.1
description PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067KMI2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06771 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05433: 2985-3489 , PASA_asmbl_05434: 5352-6103 , PASA_asmbl_05435: 8082-8835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118157_010 0.0 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
2 Hb_118157_020 0.1150735456 - - hypothetical protein MTR_3g456110 [Medicago truncatula]
3 Hb_000271_120 0.1799925309 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
4 Hb_000345_340 0.1907807389 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
5 Hb_004064_060 0.1991029245 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003266_020 0.2006896201 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
7 Hb_000007_410 0.2016265249 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 isoform X2 [Populus euphratica]
8 Hb_000866_110 0.2021592152 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
9 Hb_002780_060 0.204089296 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011925_020 0.2053094797 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000406_190 0.2059633301 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_000205_250 0.2071669707 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
13 Hb_011909_010 0.208622001 - - PREDICTED: uncharacterized protein LOC100246941 [Vitis vinifera]
14 Hb_006794_020 0.2095733306 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
15 Hb_001006_010 0.2103356076 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000527_070 0.2106819729 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
17 Hb_011798_030 0.2124116319 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Vitis vinifera]
18 Hb_143629_020 0.2125684423 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
19 Hb_004586_090 0.2162798244 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
20 Hb_009898_030 0.2166471525 - - PREDICTED: uncharacterized protein LOC103720281 [Phoenix dactylifera]

Gene co-expression network

sample Hb_118157_010 Hb_118157_010 Hb_118157_020 Hb_118157_020 Hb_118157_010--Hb_118157_020 Hb_000271_120 Hb_000271_120 Hb_118157_010--Hb_000271_120 Hb_000345_340 Hb_000345_340 Hb_118157_010--Hb_000345_340 Hb_004064_060 Hb_004064_060 Hb_118157_010--Hb_004064_060 Hb_003266_020 Hb_003266_020 Hb_118157_010--Hb_003266_020 Hb_000007_410 Hb_000007_410 Hb_118157_010--Hb_000007_410 Hb_000406_190 Hb_000406_190 Hb_118157_020--Hb_000406_190 Hb_011853_010 Hb_011853_010 Hb_118157_020--Hb_011853_010 Hb_149515_010 Hb_149515_010 Hb_118157_020--Hb_149515_010 Hb_011909_010 Hb_011909_010 Hb_118157_020--Hb_011909_010 Hb_000866_110 Hb_000866_110 Hb_118157_020--Hb_000866_110 Hb_011925_020 Hb_011925_020 Hb_000271_120--Hb_011925_020 Hb_000205_250 Hb_000205_250 Hb_000271_120--Hb_000205_250 Hb_000271_120--Hb_000007_410 Hb_000049_250 Hb_000049_250 Hb_000271_120--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000271_120--Hb_000220_120 Hb_001006_010 Hb_001006_010 Hb_000271_120--Hb_001006_010 Hb_002471_140 Hb_002471_140 Hb_000345_340--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000345_340--Hb_008667_060 Hb_000345_340--Hb_000271_120 Hb_001080_140 Hb_001080_140 Hb_000345_340--Hb_001080_140 Hb_000866_090 Hb_000866_090 Hb_000345_340--Hb_000866_090 Hb_000059_130 Hb_000059_130 Hb_000345_340--Hb_000059_130 Hb_083078_010 Hb_083078_010 Hb_004064_060--Hb_083078_010 Hb_143629_020 Hb_143629_020 Hb_004064_060--Hb_143629_020 Hb_000161_240 Hb_000161_240 Hb_004064_060--Hb_000161_240 Hb_001675_100 Hb_001675_100 Hb_004064_060--Hb_001675_100 Hb_000258_090 Hb_000258_090 Hb_004064_060--Hb_000258_090 Hb_007290_070 Hb_007290_070 Hb_004064_060--Hb_007290_070 Hb_002968_070 Hb_002968_070 Hb_003266_020--Hb_002968_070 Hb_005883_110 Hb_005883_110 Hb_003266_020--Hb_005883_110 Hb_001953_120 Hb_001953_120 Hb_003266_020--Hb_001953_120 Hb_012940_040 Hb_012940_040 Hb_003266_020--Hb_012940_040 Hb_015183_100 Hb_015183_100 Hb_003266_020--Hb_015183_100 Hb_088144_020 Hb_088144_020 Hb_003266_020--Hb_088144_020 Hb_004586_090 Hb_004586_090 Hb_000007_410--Hb_004586_090 Hb_000015_200 Hb_000015_200 Hb_000007_410--Hb_000015_200 Hb_000007_410--Hb_000258_090 Hb_003964_110 Hb_003964_110 Hb_000007_410--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_000007_410--Hb_000599_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.616 5.8798 4.43605 1.44685 0.216343 1.84049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.228511 0.131867 2.22264 6.297 4.54885

CAGE analysis