Hb_000345_330

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig345: 283052-287113
Sequence    

Annotation

kegg
ID tcc:TCM_005805
description NB-ARC domain-containing disease resistance-like protein isoform 1
nr
ID XP_007052422.1
description NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A061DV38
description NB-ARC domain-containing disease resistance-like protein isoform 1 OS=Theobroma cacao GN=TCM_005805 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36011: 286445-286709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_330 0.0 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
2 Hb_001085_030 0.1021910661 - - Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao]
3 Hb_014497_020 0.1132411559 - - PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Jatropha curcas]
4 Hb_065408_010 0.1135500002 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
5 Hb_007120_060 0.1218444821 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
6 Hb_011609_150 0.1268582468 - - PREDICTED: HEAT repeat-containing protein 5B [Jatropha curcas]
7 Hb_122273_020 0.1311353362 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
8 Hb_003895_040 0.1410389436 - - hypothetical protein CISIN_1g0006512mg, partial [Citrus sinensis]
9 Hb_000925_090 0.141708689 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
10 Hb_001133_030 0.1429467492 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
11 Hb_001054_120 0.1431411305 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
12 Hb_001726_100 0.1432403796 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 19 isoform X2 [Jatropha curcas]
13 Hb_003506_050 0.1445318085 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_007545_130 0.1452055156 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
15 Hb_000086_690 0.1455653664 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
16 Hb_002986_070 0.1479718636 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
17 Hb_099270_030 0.1519808427 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
18 Hb_000487_200 0.1520788582 - - -
19 Hb_001124_050 0.1528976481 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
20 Hb_001989_050 0.1530446105 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_330 Hb_000345_330 Hb_001085_030 Hb_001085_030 Hb_000345_330--Hb_001085_030 Hb_014497_020 Hb_014497_020 Hb_000345_330--Hb_014497_020 Hb_065408_010 Hb_065408_010 Hb_000345_330--Hb_065408_010 Hb_007120_060 Hb_007120_060 Hb_000345_330--Hb_007120_060 Hb_011609_150 Hb_011609_150 Hb_000345_330--Hb_011609_150 Hb_122273_020 Hb_122273_020 Hb_000345_330--Hb_122273_020 Hb_001133_030 Hb_001133_030 Hb_001085_030--Hb_001133_030 Hb_000261_150 Hb_000261_150 Hb_001085_030--Hb_000261_150 Hb_000925_090 Hb_000925_090 Hb_001085_030--Hb_000925_090 Hb_000083_070 Hb_000083_070 Hb_001085_030--Hb_000083_070 Hb_001085_030--Hb_007120_060 Hb_001085_030--Hb_014497_020 Hb_007576_210 Hb_007576_210 Hb_014497_020--Hb_007576_210 Hb_003895_040 Hb_003895_040 Hb_014497_020--Hb_003895_040 Hb_001124_050 Hb_001124_050 Hb_014497_020--Hb_001124_050 Hb_003211_040 Hb_003211_040 Hb_014497_020--Hb_003211_040 Hb_001662_180 Hb_001662_180 Hb_014497_020--Hb_001662_180 Hb_009486_170 Hb_009486_170 Hb_014497_020--Hb_009486_170 Hb_065408_010--Hb_007120_060 Hb_005211_020 Hb_005211_020 Hb_065408_010--Hb_005211_020 Hb_002636_110 Hb_002636_110 Hb_065408_010--Hb_002636_110 Hb_001726_100 Hb_001726_100 Hb_065408_010--Hb_001726_100 Hb_065408_010--Hb_000925_090 Hb_065408_010--Hb_001085_030 Hb_007120_060--Hb_001726_100 Hb_007120_060--Hb_000925_090 Hb_007120_060--Hb_001133_030 Hb_000003_410 Hb_000003_410 Hb_007120_060--Hb_000003_410 Hb_003119_080 Hb_003119_080 Hb_011609_150--Hb_003119_080 Hb_011609_150--Hb_003211_040 Hb_011609_150--Hb_007120_060 Hb_000086_690 Hb_000086_690 Hb_011609_150--Hb_000086_690 Hb_011609_150--Hb_014497_020 Hb_002095_070 Hb_002095_070 Hb_011609_150--Hb_002095_070 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_014720_030 Hb_014720_030 Hb_122273_020--Hb_014720_030 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_002918_320 Hb_002918_320 Hb_122273_020--Hb_002918_320 Hb_004875_010 Hb_004875_010 Hb_122273_020--Hb_004875_010 Hb_000413_250 Hb_000413_250 Hb_122273_020--Hb_000413_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.647031 1.65811 0.383926 0.46741 0.671737 0.84469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.139459 0.10975 0.194592 1.00309 1.84556

CAGE analysis