Hb_010605_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig10605: 38328-41123
Sequence    

Annotation

kegg
ID rcu:RCOM_0108660
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002532244.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9T1X5
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0108660 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01987: 40126-41536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010605_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_000197_230 0.1118505378 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
3 Hb_002119_070 0.134036991 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
4 Hb_163658_010 0.1458897037 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_001408_150 0.1480169479 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
6 Hb_001071_060 0.1507407604 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
7 Hb_001391_100 0.1530470525 - - AMP dependent ligase, putative [Ricinus communis]
8 Hb_000778_020 0.154102488 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
9 Hb_159411_010 0.1586749915 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_002739_060 0.1590248015 - - -
11 Hb_106136_010 0.1638740995 - - Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_169620_010 0.165603361 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_062229_010 0.1684145264 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_000532_130 0.170045137 - - hypothetical protein [Anabaena sp. PCC 7108]
15 Hb_007253_040 0.1719106042 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
16 Hb_000083_130 0.1730356446 - - hypothetical protein RCOM_0884570 [Ricinus communis]
17 Hb_060909_010 0.1738757411 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
18 Hb_001832_210 0.174944495 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
19 Hb_008175_030 0.1755373387 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
20 Hb_010253_020 0.179179425 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010605_010 Hb_010605_010 Hb_000197_230 Hb_000197_230 Hb_010605_010--Hb_000197_230 Hb_002119_070 Hb_002119_070 Hb_010605_010--Hb_002119_070 Hb_163658_010 Hb_163658_010 Hb_010605_010--Hb_163658_010 Hb_001408_150 Hb_001408_150 Hb_010605_010--Hb_001408_150 Hb_001071_060 Hb_001071_060 Hb_010605_010--Hb_001071_060 Hb_001391_100 Hb_001391_100 Hb_010605_010--Hb_001391_100 Hb_000197_230--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_000197_230--Hb_001832_210 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_000197_230--Hb_001391_100 Hb_004531_110 Hb_004531_110 Hb_002119_070--Hb_004531_110 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002928_120 Hb_002928_120 Hb_002119_070--Hb_002928_120 Hb_002119_070--Hb_001071_060 Hb_151706_010 Hb_151706_010 Hb_002119_070--Hb_151706_010 Hb_060909_010 Hb_060909_010 Hb_163658_010--Hb_060909_010 Hb_169620_010 Hb_169620_010 Hb_163658_010--Hb_169620_010 Hb_000544_020 Hb_000544_020 Hb_163658_010--Hb_000544_020 Hb_004648_100 Hb_004648_100 Hb_163658_010--Hb_004648_100 Hb_163658_010--Hb_001408_150 Hb_001408_150--Hb_060909_010 Hb_000778_020 Hb_000778_020 Hb_001408_150--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_001408_150--Hb_008175_030 Hb_002739_060 Hb_002739_060 Hb_001408_150--Hb_002739_060 Hb_000532_130 Hb_000532_130 Hb_001408_150--Hb_000532_130 Hb_001408_150--Hb_000197_230 Hb_001071_060--Hb_001832_210 Hb_001071_060--Hb_004531_110 Hb_064047_010 Hb_064047_010 Hb_001071_060--Hb_064047_010 Hb_001071_060--Hb_000778_020 Hb_002324_040 Hb_002324_040 Hb_001071_060--Hb_002324_040 Hb_062229_010 Hb_062229_010 Hb_001391_100--Hb_062229_010 Hb_061908_020 Hb_061908_020 Hb_001391_100--Hb_061908_020 Hb_000261_320 Hb_000261_320 Hb_001391_100--Hb_000261_320 Hb_002003_040 Hb_002003_040 Hb_001391_100--Hb_002003_040 Hb_004605_020 Hb_004605_020 Hb_001391_100--Hb_004605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.704542 4.64665 0.943686 3.06259 0.151711 1.42949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.01232 0.0235377 3.29489 1.49625

CAGE analysis