Hb_007718_020

Information

Type -
Description -
Location Contig7718: 12534-20890
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010495856.1
description PREDICTED: receptor-like protein 12 [Camelina sativa]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57679: 19526-20104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007718_020 0.0 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
2 Hb_001146_050 0.1958106007 - - -
3 Hb_004878_010 0.2166255523 - - -
4 Hb_033555_010 0.2249702199 - - -
5 Hb_050034_010 0.2289382577 - - PREDICTED: cullin-1 [Jatropha curcas]
6 Hb_007456_020 0.2290797787 - - unknown [Lotus japonicus]
7 Hb_000771_090 0.2418019749 - - hypothetical protein B456_012G003500 [Gossypium raimondii]
8 Hb_000366_020 0.2446410126 - - -
9 Hb_125431_010 0.2522009182 - - -
10 Hb_012490_110 0.2536054953 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
11 Hb_034359_010 0.2588668129 - - -
12 Hb_017098_010 0.2666375959 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_001341_190 0.266926466 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
14 Hb_002311_260 0.2676659961 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
15 Hb_000940_170 0.2700445424 - - hypothetical protein VITISV_029834 [Vitis vinifera]
16 Hb_005271_230 0.2761426324 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
17 Hb_000019_010 0.2763444357 - - PREDICTED: long chain base biosynthesis protein 2a [Jatropha curcas]
18 Hb_000735_170 0.2781164594 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
19 Hb_006422_030 0.2784195182 - - -
20 Hb_002477_040 0.2812914917 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_007718_020 Hb_007718_020 Hb_001146_050 Hb_001146_050 Hb_007718_020--Hb_001146_050 Hb_004878_010 Hb_004878_010 Hb_007718_020--Hb_004878_010 Hb_033555_010 Hb_033555_010 Hb_007718_020--Hb_033555_010 Hb_050034_010 Hb_050034_010 Hb_007718_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_007718_020--Hb_007456_020 Hb_000771_090 Hb_000771_090 Hb_007718_020--Hb_000771_090 Hb_001146_050--Hb_004878_010 Hb_004409_030 Hb_004409_030 Hb_001146_050--Hb_004409_030 Hb_004657_030 Hb_004657_030 Hb_001146_050--Hb_004657_030 Hb_146510_010 Hb_146510_010 Hb_001146_050--Hb_146510_010 Hb_086336_010 Hb_086336_010 Hb_001146_050--Hb_086336_010 Hb_038862_010 Hb_038862_010 Hb_004878_010--Hb_038862_010 Hb_012490_110 Hb_012490_110 Hb_004878_010--Hb_012490_110 Hb_004878_010--Hb_004409_030 Hb_005271_230 Hb_005271_230 Hb_004878_010--Hb_005271_230 Hb_000098_200 Hb_000098_200 Hb_033555_010--Hb_000098_200 Hb_169586_010 Hb_169586_010 Hb_033555_010--Hb_169586_010 Hb_002477_040 Hb_002477_040 Hb_033555_010--Hb_002477_040 Hb_000735_170 Hb_000735_170 Hb_033555_010--Hb_000735_170 Hb_004602_020 Hb_004602_020 Hb_033555_010--Hb_004602_020 Hb_050034_010--Hb_007456_020 Hb_102591_010 Hb_102591_010 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_060391_010 Hb_060391_010 Hb_050034_010--Hb_060391_010 Hb_007456_020--Hb_099116_010 Hb_007456_020--Hb_102591_010 Hb_169656_010 Hb_169656_010 Hb_007456_020--Hb_169656_010 Hb_003780_020 Hb_003780_020 Hb_007456_020--Hb_003780_020 Hb_007456_020--Hb_000168_010 Hb_125431_010 Hb_125431_010 Hb_000771_090--Hb_125431_010 Hb_007973_010 Hb_007973_010 Hb_000771_090--Hb_007973_010 Hb_001726_090 Hb_001726_090 Hb_000771_090--Hb_001726_090 Hb_000771_090--Hb_050034_010 Hb_149225_010 Hb_149225_010 Hb_000771_090--Hb_149225_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0638251 0.165144 0.0528252 0.675124 0.128851 0.835245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.117792 0 0.788845 0.867128

CAGE analysis