Hb_001726_090

Information

Type -
Description -
Location Contig1726: 139194-141124
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16315: 142122-142329 , PASA_asmbl_16317: 95788-157105 , PASA_asmbl_16324: 97680-147325 , PASA_asmbl_16329: 139890-140845 , PASA_asmbl_16330: 95963-142836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001726_090 0.0 - - -
2 Hb_000270_390 0.1236021723 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
3 Hb_000200_350 0.1289342316 - - PREDICTED: uncharacterized protein LOC105636929 [Jatropha curcas]
4 Hb_024184_010 0.1378161304 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
5 Hb_001627_040 0.1381798368 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
6 Hb_001421_090 0.1384910778 - - hypothetical protein RCOM_1278080 [Ricinus communis]
7 Hb_002883_030 0.1404796465 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
8 Hb_004317_060 0.1406766623 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
9 Hb_003544_160 0.1408340636 - - -
10 Hb_001662_100 0.1447731989 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
11 Hb_010344_030 0.1450614466 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000731_010 0.1459495419 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
13 Hb_142328_010 0.1476743351 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
14 Hb_002400_320 0.1482511036 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000803_320 0.1485129087 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
16 Hb_032920_050 0.149190475 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
17 Hb_002414_050 0.1514611456 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
18 Hb_003106_190 0.1524998697 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
19 Hb_158560_010 0.1530134235 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
20 Hb_000327_110 0.1540278136 - - hypothetical protein JCGZ_06657 [Jatropha curcas]

Gene co-expression network

sample Hb_001726_090 Hb_001726_090 Hb_000270_390 Hb_000270_390 Hb_001726_090--Hb_000270_390 Hb_000200_350 Hb_000200_350 Hb_001726_090--Hb_000200_350 Hb_024184_010 Hb_024184_010 Hb_001726_090--Hb_024184_010 Hb_001627_040 Hb_001627_040 Hb_001726_090--Hb_001627_040 Hb_001421_090 Hb_001421_090 Hb_001726_090--Hb_001421_090 Hb_002883_030 Hb_002883_030 Hb_001726_090--Hb_002883_030 Hb_000803_320 Hb_000803_320 Hb_000270_390--Hb_000803_320 Hb_002768_060 Hb_002768_060 Hb_000270_390--Hb_002768_060 Hb_003544_160 Hb_003544_160 Hb_000270_390--Hb_003544_160 Hb_002874_110 Hb_002874_110 Hb_000270_390--Hb_002874_110 Hb_000789_200 Hb_000789_200 Hb_000270_390--Hb_000789_200 Hb_004317_060 Hb_004317_060 Hb_000270_390--Hb_004317_060 Hb_006006_060 Hb_006006_060 Hb_000200_350--Hb_006006_060 Hb_000934_110 Hb_000934_110 Hb_000200_350--Hb_000934_110 Hb_010344_030 Hb_010344_030 Hb_000200_350--Hb_010344_030 Hb_009020_040 Hb_009020_040 Hb_000200_350--Hb_009020_040 Hb_001157_230 Hb_001157_230 Hb_000200_350--Hb_001157_230 Hb_000200_350--Hb_024184_010 Hb_001876_040 Hb_001876_040 Hb_024184_010--Hb_001876_040 Hb_024184_010--Hb_001157_230 Hb_003125_220 Hb_003125_220 Hb_024184_010--Hb_003125_220 Hb_000212_120 Hb_000212_120 Hb_024184_010--Hb_000212_120 Hb_024184_010--Hb_002883_030 Hb_007545_010 Hb_007545_010 Hb_024184_010--Hb_007545_010 Hb_001029_040 Hb_001029_040 Hb_001627_040--Hb_001029_040 Hb_001080_300 Hb_001080_300 Hb_001627_040--Hb_001080_300 Hb_004957_030 Hb_004957_030 Hb_001627_040--Hb_004957_030 Hb_001627_040--Hb_007545_010 Hb_001627_040--Hb_000803_320 Hb_000417_390 Hb_000417_390 Hb_001627_040--Hb_000417_390 Hb_000617_250 Hb_000617_250 Hb_001421_090--Hb_000617_250 Hb_001421_090--Hb_024184_010 Hb_001439_070 Hb_001439_070 Hb_001421_090--Hb_001439_070 Hb_000300_510 Hb_000300_510 Hb_001421_090--Hb_000300_510 Hb_000538_280 Hb_000538_280 Hb_001421_090--Hb_000538_280 Hb_005914_040 Hb_005914_040 Hb_001421_090--Hb_005914_040 Hb_000345_160 Hb_000345_160 Hb_002883_030--Hb_000345_160 Hb_000300_270 Hb_000300_270 Hb_002883_030--Hb_000300_270 Hb_002897_090 Hb_002897_090 Hb_002883_030--Hb_002897_090 Hb_001662_100 Hb_001662_100 Hb_002883_030--Hb_001662_100 Hb_000049_020 Hb_000049_020 Hb_002883_030--Hb_000049_020 Hb_004037_020 Hb_004037_020 Hb_002883_030--Hb_004037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276743 0.884721 0.691582 1.38726 0.728804 1.3834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.876837 0.516604 0.271261 0.671018 2.08231

CAGE analysis