Hb_004602_020

Information

Type transcription factor
Description TF Family: SET
Location Contig4602: 19048-27762
Sequence    

Annotation

kegg
ID rcu:RCOM_0744910
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative (EC:2.1.1.127)
nr
ID XP_012073450.1
description PREDICTED: N-lysine methyltransferase setd6 isoform X2 [Jatropha curcas]
swissprot
ID Q43088
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1
trembl
ID B9SGF2
description Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast, putative OS=Ricinus communis GN=RCOM_0744910 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ribulose- bisphosphate carboxylase oxygenase large subunit n- chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43691: 19310-20453 , PASA_asmbl_43692: 21867-23425 , PASA_asmbl_43693: 27664-27773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004602_020 0.0 transcription factor TF Family: SET PREDICTED: N-lysine methyltransferase setd6 isoform X2 [Jatropha curcas]
2 Hb_004746_010 0.1370275246 - - aldo/keto reductase, putative [Ricinus communis]
3 Hb_024570_040 0.1401842179 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
4 Hb_001434_020 0.1452575682 - - hypothetical protein RCOM_0841800 [Ricinus communis]
5 Hb_002284_100 0.1510595012 - - ribophorin, putative [Ricinus communis]
6 Hb_011214_110 0.1531249999 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_000849_080 0.162377817 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
8 Hb_000098_200 0.1630454974 - - PREDICTED: serine hydroxymethyltransferase 7-like isoform X2 [Populus euphratica]
9 Hb_012353_040 0.1667605833 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_001018_060 0.1670331216 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
11 Hb_000358_210 0.1710073092 - - oligosaccharyl transferase, putative [Ricinus communis]
12 Hb_169656_010 0.1710686403 - - protein phosphatase, putative [Ricinus communis]
13 Hb_005701_090 0.1712626376 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_001677_100 0.1732623193 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
15 Hb_002392_020 0.1733798539 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
16 Hb_000140_450 0.1736435667 - - PREDICTED: calreticulin-3-like [Populus euphratica]
17 Hb_000645_070 0.1742555414 - - aldehyde dehydrogenase, putative [Ricinus communis]
18 Hb_007943_150 0.175106848 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
19 Hb_000866_070 0.1751867497 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
20 Hb_001053_080 0.1752810616 - - OsCesA3 protein [Morus notabilis]

Gene co-expression network

sample Hb_004602_020 Hb_004602_020 Hb_004746_010 Hb_004746_010 Hb_004602_020--Hb_004746_010 Hb_024570_040 Hb_024570_040 Hb_004602_020--Hb_024570_040 Hb_001434_020 Hb_001434_020 Hb_004602_020--Hb_001434_020 Hb_002284_100 Hb_002284_100 Hb_004602_020--Hb_002284_100 Hb_011214_110 Hb_011214_110 Hb_004602_020--Hb_011214_110 Hb_000849_080 Hb_000849_080 Hb_004602_020--Hb_000849_080 Hb_000984_140 Hb_000984_140 Hb_004746_010--Hb_000984_140 Hb_004746_010--Hb_001434_020 Hb_004204_210 Hb_004204_210 Hb_004746_010--Hb_004204_210 Hb_001677_100 Hb_001677_100 Hb_004746_010--Hb_001677_100 Hb_024758_020 Hb_024758_020 Hb_004746_010--Hb_024758_020 Hb_005772_030 Hb_005772_030 Hb_004746_010--Hb_005772_030 Hb_002232_490 Hb_002232_490 Hb_024570_040--Hb_002232_490 Hb_024570_040--Hb_002284_100 Hb_024570_040--Hb_000849_080 Hb_002392_020 Hb_002392_020 Hb_024570_040--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_024570_040--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_024570_040--Hb_009524_030 Hb_001434_020--Hb_001677_100 Hb_001434_020--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_001434_020--Hb_007943_150 Hb_009296_020 Hb_009296_020 Hb_001434_020--Hb_009296_020 Hb_001434_020--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001434_020--Hb_070624_010 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_002284_100--Hb_002392_020 Hb_002284_100--Hb_000358_210 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_004223_140 Hb_004223_140 Hb_011214_110--Hb_004223_140 Hb_011214_110--Hb_001677_100 Hb_003929_180 Hb_003929_180 Hb_011214_110--Hb_003929_180 Hb_019654_060 Hb_019654_060 Hb_011214_110--Hb_019654_060 Hb_004032_210 Hb_004032_210 Hb_011214_110--Hb_004032_210 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_103688_010 Hb_103688_010 Hb_000849_080--Hb_103688_010 Hb_002007_260 Hb_002007_260 Hb_000849_080--Hb_002007_260 Hb_002808_020 Hb_002808_020 Hb_000849_080--Hb_002808_020 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237929 0.197776 1.23082 1.14989 0.629246 0.744093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.077704 0.101895 0.0770133 1.12027 0.943797

CAGE analysis