Hb_125431_010

Information

Type -
Description -
Location Contig125431: 53-1187
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0E0KVY1
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07804: 262-818 , PASA_asmbl_07805: 343-1125
cDNA
(Sanger)
(ID:Location)		 042_K03.ab1: 245-1182

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_125431_010 0.0 - - -
2 Hb_007973_010 0.1667982193 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
3 Hb_000771_090 0.2071180397 - - hypothetical protein B456_012G003500 [Gossypium raimondii]
4 Hb_017098_010 0.212489255 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_000656_090 0.2204673339 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
6 Hb_008447_030 0.2205847483 - - -
7 Hb_000084_200 0.2227306316 - - PREDICTED: uncharacterized protein LOC105634688 isoform X2 [Jatropha curcas]
8 Hb_001726_090 0.229903482 - - -
9 Hb_000328_050 0.2321450066 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
10 Hb_004303_040 0.2355296214 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
11 Hb_001221_340 0.235832464 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
12 Hb_099116_010 0.2371902982 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003606_060 0.2374519637 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
14 Hb_007456_020 0.2390101582 - - unknown [Lotus japonicus]
15 Hb_001584_340 0.2402448924 - - PREDICTED: ATP-citrate synthase alpha chain protein 2 [Jatropha curcas]
16 Hb_002126_010 0.240905995 - - predicted protein [Hordeum vulgare subsp. vulgare]
17 Hb_000256_200 0.2415762246 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000160_160 0.2418306343 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
19 Hb_008447_040 0.2456309344 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
20 Hb_003642_010 0.2460955717 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_125431_010 Hb_125431_010 Hb_007973_010 Hb_007973_010 Hb_125431_010--Hb_007973_010 Hb_000771_090 Hb_000771_090 Hb_125431_010--Hb_000771_090 Hb_017098_010 Hb_017098_010 Hb_125431_010--Hb_017098_010 Hb_000656_090 Hb_000656_090 Hb_125431_010--Hb_000656_090 Hb_008447_030 Hb_008447_030 Hb_125431_010--Hb_008447_030 Hb_000084_200 Hb_000084_200 Hb_125431_010--Hb_000084_200 Hb_001221_340 Hb_001221_340 Hb_007973_010--Hb_001221_340 Hb_052764_110 Hb_052764_110 Hb_007973_010--Hb_052764_110 Hb_004317_060 Hb_004317_060 Hb_007973_010--Hb_004317_060 Hb_008447_040 Hb_008447_040 Hb_007973_010--Hb_008447_040 Hb_004785_080 Hb_004785_080 Hb_007973_010--Hb_004785_080 Hb_000270_390 Hb_000270_390 Hb_007973_010--Hb_000270_390 Hb_007718_020 Hb_007718_020 Hb_000771_090--Hb_007718_020 Hb_000771_090--Hb_007973_010 Hb_001726_090 Hb_001726_090 Hb_000771_090--Hb_001726_090 Hb_050034_010 Hb_050034_010 Hb_000771_090--Hb_050034_010 Hb_149225_010 Hb_149225_010 Hb_000771_090--Hb_149225_010 Hb_016760_010 Hb_016760_010 Hb_017098_010--Hb_016760_010 Hb_003777_250 Hb_003777_250 Hb_017098_010--Hb_003777_250 Hb_003632_030 Hb_003632_030 Hb_017098_010--Hb_003632_030 Hb_011616_020 Hb_011616_020 Hb_017098_010--Hb_011616_020 Hb_000529_140 Hb_000529_140 Hb_017098_010--Hb_000529_140 Hb_001080_150 Hb_001080_150 Hb_017098_010--Hb_001080_150 Hb_000656_090--Hb_008447_030 Hb_012627_020 Hb_012627_020 Hb_000656_090--Hb_012627_020 Hb_000160_160 Hb_000160_160 Hb_000656_090--Hb_000160_160 Hb_003030_030 Hb_003030_030 Hb_000656_090--Hb_003030_030 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020 Hb_008447_030--Hb_026745_020 Hb_006274_040 Hb_006274_040 Hb_008447_030--Hb_006274_040 Hb_002200_040 Hb_002200_040 Hb_008447_030--Hb_002200_040 Hb_008447_030--Hb_000160_160 Hb_008447_030--Hb_008447_040 Hb_005015_060 Hb_005015_060 Hb_000084_200--Hb_005015_060 Hb_001014_110 Hb_001014_110 Hb_000084_200--Hb_001014_110 Hb_004724_460 Hb_004724_460 Hb_000084_200--Hb_004724_460 Hb_000608_380 Hb_000608_380 Hb_000084_200--Hb_000608_380 Hb_005701_060 Hb_005701_060 Hb_000084_200--Hb_005701_060 Hb_000599_200 Hb_000599_200 Hb_000084_200--Hb_000599_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.018 1.52807 1.77036 9.2201 1.96699 11.3991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54579 3.16941 0 7.51318 16.3219

CAGE analysis