Hb_000771_090

Information

Type -
Description -
Location Contig771: 43978-50712
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_915965
description hypothetical protein
nr
ID KJB74710.1
description hypothetical protein B456_012G003500 [Gossypium raimondii]
swissprot
ID Q9LDR2
description Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=3 SV=1
trembl
ID A0A0D2VTT6
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G003500 PE=4 SV=1
Gene Ontology
ID GO:0005221
description cyclic nucleotide-gated ion channel 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000771_090 0.0 - - hypothetical protein B456_012G003500 [Gossypium raimondii]
2 Hb_125431_010 0.2071180397 - - -
3 Hb_007718_020 0.2418019749 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
4 Hb_007973_010 0.2434733489 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
5 Hb_001726_090 0.2495758383 - - -
6 Hb_050034_010 0.2508959706 - - PREDICTED: cullin-1 [Jatropha curcas]
7 Hb_149225_010 0.2536094329 - - DNA-directed RNA polymerase II subunit rpb4, putative isoform 4, partial [Theobroma cacao]
8 Hb_000552_100 0.2539201959 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
9 Hb_086765_010 0.2544859588 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
10 Hb_017098_010 0.259910201 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_004317_060 0.2635050823 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
12 Hb_004878_010 0.2682389087 - - -
13 Hb_002986_060 0.2690434018 - - hypothetical protein M569_15879, partial [Genlisea aurea]
14 Hb_002477_050 0.2708015951 - - unnamed protein product [Coffea canephora]
15 Hb_000139_150 0.2768259343 - - transposon protein, putative, Mutator sub-class [Oryza sativa Japonica Group]
16 Hb_007456_020 0.2784648317 - - unknown [Lotus japonicus]
17 Hb_041828_010 0.2784950616 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
18 Hb_008447_030 0.2785150451 - - -
19 Hb_000575_100 0.2796988266 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
20 Hb_002477_040 0.2806023286 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000771_090 Hb_000771_090 Hb_125431_010 Hb_125431_010 Hb_000771_090--Hb_125431_010 Hb_007718_020 Hb_007718_020 Hb_000771_090--Hb_007718_020 Hb_007973_010 Hb_007973_010 Hb_000771_090--Hb_007973_010 Hb_001726_090 Hb_001726_090 Hb_000771_090--Hb_001726_090 Hb_050034_010 Hb_050034_010 Hb_000771_090--Hb_050034_010 Hb_149225_010 Hb_149225_010 Hb_000771_090--Hb_149225_010 Hb_125431_010--Hb_007973_010 Hb_017098_010 Hb_017098_010 Hb_125431_010--Hb_017098_010 Hb_000656_090 Hb_000656_090 Hb_125431_010--Hb_000656_090 Hb_008447_030 Hb_008447_030 Hb_125431_010--Hb_008447_030 Hb_000084_200 Hb_000084_200 Hb_125431_010--Hb_000084_200 Hb_001146_050 Hb_001146_050 Hb_007718_020--Hb_001146_050 Hb_004878_010 Hb_004878_010 Hb_007718_020--Hb_004878_010 Hb_033555_010 Hb_033555_010 Hb_007718_020--Hb_033555_010 Hb_007718_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_007718_020--Hb_007456_020 Hb_001221_340 Hb_001221_340 Hb_007973_010--Hb_001221_340 Hb_052764_110 Hb_052764_110 Hb_007973_010--Hb_052764_110 Hb_004317_060 Hb_004317_060 Hb_007973_010--Hb_004317_060 Hb_008447_040 Hb_008447_040 Hb_007973_010--Hb_008447_040 Hb_004785_080 Hb_004785_080 Hb_007973_010--Hb_004785_080 Hb_000270_390 Hb_000270_390 Hb_007973_010--Hb_000270_390 Hb_001726_090--Hb_000270_390 Hb_000200_350 Hb_000200_350 Hb_001726_090--Hb_000200_350 Hb_024184_010 Hb_024184_010 Hb_001726_090--Hb_024184_010 Hb_001627_040 Hb_001627_040 Hb_001726_090--Hb_001627_040 Hb_001421_090 Hb_001421_090 Hb_001726_090--Hb_001421_090 Hb_002883_030 Hb_002883_030 Hb_001726_090--Hb_002883_030 Hb_050034_010--Hb_007456_020 Hb_102591_010 Hb_102591_010 Hb_050034_010--Hb_102591_010 Hb_099116_010 Hb_099116_010 Hb_050034_010--Hb_099116_010 Hb_165402_010 Hb_165402_010 Hb_050034_010--Hb_165402_010 Hb_000168_010 Hb_000168_010 Hb_050034_010--Hb_000168_010 Hb_060391_010 Hb_060391_010 Hb_050034_010--Hb_060391_010 Hb_002400_330 Hb_002400_330 Hb_149225_010--Hb_002400_330 Hb_012194_050 Hb_012194_050 Hb_149225_010--Hb_012194_050 Hb_000718_080 Hb_000718_080 Hb_149225_010--Hb_000718_080 Hb_002600_140 Hb_002600_140 Hb_149225_010--Hb_002600_140 Hb_041828_010 Hb_041828_010 Hb_149225_010--Hb_041828_010 Hb_007026_040 Hb_007026_040 Hb_149225_010--Hb_007026_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.378308 0.0729813 0.662636 0.367616 1.09755
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.219209 0.172201 0 0.521903 0.892417

CAGE analysis