Hb_004878_010

Information

Type -
Description -
Location Contig4878: 7321-7724
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004878_010 0.0 - - -
2 Hb_001146_050 0.1115638955 - - -
3 Hb_007718_020 0.2166255523 - - PREDICTED: receptor-like protein 12 [Camelina sativa]
4 Hb_038862_010 0.2184813523 - - PREDICTED: uncharacterized protein LOC104883809 [Beta vulgaris subsp. vulgaris]
5 Hb_012490_110 0.2200276834 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
6 Hb_004409_030 0.2232150257 - - Glutamine synthetase 1,4 [Theobroma cacao]
7 Hb_005271_230 0.2424494439 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
8 Hb_025668_030 0.243288975 - - PREDICTED: oxysterol-binding protein-related protein 4B [Jatropha curcas]
9 Hb_086336_010 0.2459835147 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_106136_010 0.2468179224 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_050034_010 0.2494936921 - - PREDICTED: cullin-1 [Jatropha curcas]
12 Hb_146510_010 0.2503790354 - - cinnamyl alcohol dehydrogenase [Hevea brasiliensis]
13 Hb_014497_040 0.2537663769 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
14 Hb_167973_010 0.2599389591 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
15 Hb_003854_020 0.2606839518 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
16 Hb_000366_020 0.2642453992 - - -
17 Hb_006422_030 0.2642624602 - - -
18 Hb_001304_130 0.2646856419 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
19 Hb_001004_120 0.2656656038 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
20 Hb_000771_090 0.2682389087 - - hypothetical protein B456_012G003500 [Gossypium raimondii]

Gene co-expression network

sample Hb_004878_010 Hb_004878_010 Hb_001146_050 Hb_001146_050 Hb_004878_010--Hb_001146_050 Hb_007718_020 Hb_007718_020 Hb_004878_010--Hb_007718_020 Hb_038862_010 Hb_038862_010 Hb_004878_010--Hb_038862_010 Hb_012490_110 Hb_012490_110 Hb_004878_010--Hb_012490_110 Hb_004409_030 Hb_004409_030 Hb_004878_010--Hb_004409_030 Hb_005271_230 Hb_005271_230 Hb_004878_010--Hb_005271_230 Hb_001146_050--Hb_004409_030 Hb_001146_050--Hb_007718_020 Hb_004657_030 Hb_004657_030 Hb_001146_050--Hb_004657_030 Hb_146510_010 Hb_146510_010 Hb_001146_050--Hb_146510_010 Hb_086336_010 Hb_086336_010 Hb_001146_050--Hb_086336_010 Hb_033555_010 Hb_033555_010 Hb_007718_020--Hb_033555_010 Hb_050034_010 Hb_050034_010 Hb_007718_020--Hb_050034_010 Hb_007456_020 Hb_007456_020 Hb_007718_020--Hb_007456_020 Hb_000771_090 Hb_000771_090 Hb_007718_020--Hb_000771_090 Hb_038862_010--Hb_012490_110 Hb_136880_010 Hb_136880_010 Hb_038862_010--Hb_136880_010 Hb_000757_020 Hb_000757_020 Hb_038862_010--Hb_000757_020 Hb_155150_010 Hb_155150_010 Hb_038862_010--Hb_155150_010 Hb_012539_030 Hb_012539_030 Hb_038862_010--Hb_012539_030 Hb_000566_180 Hb_000566_180 Hb_012490_110--Hb_000566_180 Hb_001050_020 Hb_001050_020 Hb_012490_110--Hb_001050_020 Hb_002636_040 Hb_002636_040 Hb_012490_110--Hb_002636_040 Hb_002559_030 Hb_002559_030 Hb_012490_110--Hb_002559_030 Hb_069659_010 Hb_069659_010 Hb_004409_030--Hb_069659_010 Hb_000220_080 Hb_000220_080 Hb_004409_030--Hb_000220_080 Hb_003371_190 Hb_003371_190 Hb_004409_030--Hb_003371_190 Hb_014497_040 Hb_014497_040 Hb_004409_030--Hb_014497_040 Hb_000000_110 Hb_000000_110 Hb_004409_030--Hb_000000_110 Hb_000000_120 Hb_000000_120 Hb_004409_030--Hb_000000_120 Hb_006422_030 Hb_006422_030 Hb_005271_230--Hb_006422_030 Hb_005271_230--Hb_000566_180 Hb_005271_230--Hb_050034_010 Hb_060391_010 Hb_060391_010 Hb_005271_230--Hb_060391_010 Hb_006910_050 Hb_006910_050 Hb_005271_230--Hb_006910_050 Hb_002611_030 Hb_002611_030 Hb_005271_230--Hb_002611_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163247 1.2483 0.151361 2.43914 0.632849 1.71878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.41851 1.8699

CAGE analysis