Hb_002636_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2636: 67318-71924
Sequence    

Annotation

kegg
ID rcu:RCOM_1466300
description hypothetical protein
nr
ID XP_012080485.1
description PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
swissprot
ID Q9CAA9
description Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1
trembl
ID A0A067K8S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11799 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh49 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27509: 68336-71687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_040 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
2 Hb_003632_030 0.1309887187 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
3 Hb_008092_060 0.1437137619 - - -
4 Hb_005288_110 0.1506712279 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
5 Hb_001396_240 0.1515587039 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
6 Hb_004466_050 0.1558789576 - - PREDICTED: uncharacterized protein LOC105649250, partial [Jatropha curcas]
7 Hb_001408_030 0.1586779513 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
8 Hb_010344_030 0.1637669414 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000031_230 0.1662305072 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
10 Hb_002301_310 0.1662484998 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
11 Hb_004987_070 0.1670081928 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
12 Hb_007313_100 0.1671907 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
13 Hb_001675_050 0.1687166214 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
14 Hb_002320_090 0.1688479513 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
15 Hb_000599_230 0.1692965829 - - -
16 Hb_017098_010 0.1716313505 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_000964_170 0.1721933193 - - Cellulose synthase A catalytic subunit 6 [UDP-forming], putative [Ricinus communis]
18 Hb_003053_050 0.1727947302 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
19 Hb_000505_080 0.1746111522 - - Inner membrane transport protein yjjL, putative [Ricinus communis]
20 Hb_001789_020 0.1754296768 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002636_040 Hb_002636_040 Hb_003632_030 Hb_003632_030 Hb_002636_040--Hb_003632_030 Hb_008092_060 Hb_008092_060 Hb_002636_040--Hb_008092_060 Hb_005288_110 Hb_005288_110 Hb_002636_040--Hb_005288_110 Hb_001396_240 Hb_001396_240 Hb_002636_040--Hb_001396_240 Hb_004466_050 Hb_004466_050 Hb_002636_040--Hb_004466_050 Hb_001408_030 Hb_001408_030 Hb_002636_040--Hb_001408_030 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_008092_060--Hb_001408_030 Hb_008092_050 Hb_008092_050 Hb_008092_060--Hb_008092_050 Hb_001437_120 Hb_001437_120 Hb_008092_060--Hb_001437_120 Hb_000031_230 Hb_000031_230 Hb_008092_060--Hb_000031_230 Hb_007192_090 Hb_007192_090 Hb_008092_060--Hb_007192_090 Hb_002276_070 Hb_002276_070 Hb_008092_060--Hb_002276_070 Hb_003777_250 Hb_003777_250 Hb_005288_110--Hb_003777_250 Hb_012165_020 Hb_012165_020 Hb_005288_110--Hb_012165_020 Hb_001266_120 Hb_001266_120 Hb_005288_110--Hb_001266_120 Hb_005288_110--Hb_003632_030 Hb_004738_110 Hb_004738_110 Hb_005288_110--Hb_004738_110 Hb_002320_090 Hb_002320_090 Hb_005288_110--Hb_002320_090 Hb_003462_060 Hb_003462_060 Hb_001396_240--Hb_003462_060 Hb_010344_030 Hb_010344_030 Hb_001396_240--Hb_010344_030 Hb_004994_350 Hb_004994_350 Hb_001396_240--Hb_004994_350 Hb_001396_240--Hb_004466_050 Hb_052128_010 Hb_052128_010 Hb_001396_240--Hb_052128_010 Hb_001396_240--Hb_005250_010 Hb_004466_050--Hb_052128_010 Hb_004466_050--Hb_001408_030 Hb_004466_050--Hb_008092_060 Hb_015531_030 Hb_015531_030 Hb_004466_050--Hb_015531_030 Hb_164926_010 Hb_164926_010 Hb_004466_050--Hb_164926_010 Hb_001408_030--Hb_008092_050 Hb_001408_030--Hb_001437_120 Hb_003929_220 Hb_003929_220 Hb_001408_030--Hb_003929_220 Hb_004254_100 Hb_004254_100 Hb_001408_030--Hb_004254_100 Hb_001408_030--Hb_001396_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75 3.00986 3.61851 5.42106 3.1299 6.71293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.753266 0.441883 0.268255 3.40589 11.0023

CAGE analysis