Hb_012539_030

Information

Type -
Description -
Location Contig12539: 48215-52306
Sequence    

Annotation

kegg
ID rcu:RCOM_0802390
description catalytic, putative
nr
ID XP_012077420.1
description PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
swissprot
ID O34973
description Putative hydrolase YtaP OS=Bacillus subtilis (strain 168) GN=ytaP PE=3 SV=1
trembl
ID A0A067KGT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07764 PE=4 SV=1
Gene Ontology
ID GO:0008236
description PREDICTED: uncharacterized protein LOC105638247

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07787: 48215-52064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_030 0.0 - - PREDICTED: uncharacterized protein LOC105638247 [Jatropha curcas]
2 Hb_002471_020 0.1731636668 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
3 Hb_000189_470 0.1809384203 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
4 Hb_001492_040 0.182300243 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_087587_010 0.1831811716 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_122273_020 0.1842696565 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
7 Hb_159411_010 0.1901266036 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_020178_050 0.1903259083 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
9 Hb_000126_070 0.1923175761 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
10 Hb_000345_330 0.1931886775 desease resistance Gene Name: NB-ARC NB-ARC domain-containing disease resistance-like protein isoform 1 [Theobroma cacao]
11 Hb_065500_030 0.1955568314 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
12 Hb_001369_770 0.1967734473 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
13 Hb_004310_040 0.1980625934 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009897_010 0.1983017624 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_001561_010 0.1990083247 - - PREDICTED: uncharacterized protein LOC105635045 isoform X1 [Jatropha curcas]
16 Hb_010346_020 0.2022626974 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
17 Hb_000917_100 0.2040398575 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
18 Hb_002874_170 0.2041525883 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
19 Hb_011616_040 0.2043948861 - - glucan water dikinase 3, partial [Manihot esculenta]
20 Hb_002368_030 0.2047144384 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]

Gene co-expression network

sample Hb_012539_030 Hb_012539_030 Hb_002471_020 Hb_002471_020 Hb_012539_030--Hb_002471_020 Hb_000189_470 Hb_000189_470 Hb_012539_030--Hb_000189_470 Hb_001492_040 Hb_001492_040 Hb_012539_030--Hb_001492_040 Hb_087587_010 Hb_087587_010 Hb_012539_030--Hb_087587_010 Hb_122273_020 Hb_122273_020 Hb_012539_030--Hb_122273_020 Hb_159411_010 Hb_159411_010 Hb_012539_030--Hb_159411_010 Hb_002471_020--Hb_000189_470 Hb_001817_130 Hb_001817_130 Hb_002471_020--Hb_001817_130 Hb_002368_030 Hb_002368_030 Hb_002471_020--Hb_002368_030 Hb_003126_020 Hb_003126_020 Hb_002471_020--Hb_003126_020 Hb_002471_020--Hb_159411_010 Hb_001409_050 Hb_001409_050 Hb_002471_020--Hb_001409_050 Hb_089100_040 Hb_089100_040 Hb_000189_470--Hb_089100_040 Hb_000189_470--Hb_122273_020 Hb_002918_320 Hb_002918_320 Hb_000189_470--Hb_002918_320 Hb_002005_120 Hb_002005_120 Hb_000189_470--Hb_002005_120 Hb_001699_150 Hb_001699_150 Hb_000189_470--Hb_001699_150 Hb_000413_250 Hb_000413_250 Hb_000189_470--Hb_000413_250 Hb_001959_270 Hb_001959_270 Hb_001492_040--Hb_001959_270 Hb_006573_170 Hb_006573_170 Hb_001492_040--Hb_006573_170 Hb_001723_140 Hb_001723_140 Hb_001492_040--Hb_001723_140 Hb_009476_090 Hb_009476_090 Hb_001492_040--Hb_009476_090 Hb_001989_050 Hb_001989_050 Hb_001492_040--Hb_001989_050 Hb_007283_030 Hb_007283_030 Hb_001492_040--Hb_007283_030 Hb_002740_040 Hb_002740_040 Hb_087587_010--Hb_002740_040 Hb_000165_120 Hb_000165_120 Hb_087587_010--Hb_000165_120 Hb_000917_100 Hb_000917_100 Hb_087587_010--Hb_000917_100 Hb_010346_020 Hb_010346_020 Hb_087587_010--Hb_010346_020 Hb_002259_110 Hb_002259_110 Hb_087587_010--Hb_002259_110 Hb_004837_050 Hb_004837_050 Hb_087587_010--Hb_004837_050 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_014720_030 Hb_014720_030 Hb_122273_020--Hb_014720_030 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_122273_020--Hb_002918_320 Hb_004875_010 Hb_004875_010 Hb_122273_020--Hb_004875_010 Hb_122273_020--Hb_000413_250 Hb_000197_230 Hb_000197_230 Hb_159411_010--Hb_000197_230 Hb_005880_010 Hb_005880_010 Hb_159411_010--Hb_005880_010 Hb_001369_160 Hb_001369_160 Hb_159411_010--Hb_001369_160 Hb_000083_130 Hb_000083_130 Hb_159411_010--Hb_000083_130 Hb_146510_010 Hb_146510_010 Hb_159411_010--Hb_146510_010 Hb_001488_280 Hb_001488_280 Hb_159411_010--Hb_001488_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.59 49.5973 17.2492 12.456 5.25436 28.6666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48067 1.05709 1.26161 23.7495 25.8853

CAGE analysis