Hb_001050_020

Information

Type -
Description -
Location Contig1050: 51697-55366
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01710: 54657-88947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001050_020 0.0 - - -
2 Hb_000920_290 0.1733834997 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_153258_020 0.1848026107 - - -
4 Hb_001050_050 0.2013030204 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]
5 Hb_004116_180 0.2093656693 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
6 Hb_005754_030 0.2133799965 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
7 Hb_024698_010 0.2135849435 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
8 Hb_004228_100 0.2155015712 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
9 Hb_012490_110 0.2167736345 - - PREDICTED: uncharacterized membrane protein C776.05 [Jatropha curcas]
10 Hb_000056_010 0.2190732746 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
11 Hb_015183_080 0.2240428398 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_007897_030 0.2243239166 - - PREDICTED: serine/threonine-protein kinase-like protein CCR2 [Jatropha curcas]
13 Hb_006422_020 0.2265730202 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
14 Hb_007735_060 0.2270820775 - - PPase [Hevea brasiliensis]
15 Hb_057796_010 0.2275560328 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
16 Hb_011310_100 0.2308296749 - - hypothetical protein CICLE_v10008199mg [Citrus clementina]
17 Hb_000579_030 0.2317066222 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
18 Hb_007253_020 0.2321145253 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
19 Hb_068575_010 0.2327057436 - - PREDICTED: protein GAMETE EXPRESSED 2 [Jatropha curcas]
20 Hb_033152_100 0.2345951267 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001050_020 Hb_001050_020 Hb_000920_290 Hb_000920_290 Hb_001050_020--Hb_000920_290 Hb_153258_020 Hb_153258_020 Hb_001050_020--Hb_153258_020 Hb_001050_050 Hb_001050_050 Hb_001050_020--Hb_001050_050 Hb_004116_180 Hb_004116_180 Hb_001050_020--Hb_004116_180 Hb_005754_030 Hb_005754_030 Hb_001050_020--Hb_005754_030 Hb_024698_010 Hb_024698_010 Hb_001050_020--Hb_024698_010 Hb_000473_120 Hb_000473_120 Hb_000920_290--Hb_000473_120 Hb_000920_290--Hb_004116_180 Hb_002909_100 Hb_002909_100 Hb_000920_290--Hb_002909_100 Hb_000470_110 Hb_000470_110 Hb_000920_290--Hb_000470_110 Hb_143766_030 Hb_143766_030 Hb_000920_290--Hb_143766_030 Hb_000200_170 Hb_000200_170 Hb_000920_290--Hb_000200_170 Hb_153258_020--Hb_005754_030 Hb_153258_020--Hb_000920_290 Hb_026698_030 Hb_026698_030 Hb_153258_020--Hb_026698_030 Hb_007317_090 Hb_007317_090 Hb_153258_020--Hb_007317_090 Hb_000589_420 Hb_000589_420 Hb_153258_020--Hb_000589_420 Hb_052128_010 Hb_052128_010 Hb_001050_050--Hb_052128_010 Hb_000022_190 Hb_000022_190 Hb_001050_050--Hb_000022_190 Hb_001050_050--Hb_005754_030 Hb_089246_010 Hb_089246_010 Hb_001050_050--Hb_089246_010 Hb_002986_070 Hb_002986_070 Hb_001050_050--Hb_002986_070 Hb_001396_240 Hb_001396_240 Hb_001050_050--Hb_001396_240 Hb_000579_030 Hb_000579_030 Hb_004116_180--Hb_000579_030 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_033152_100 Hb_033152_100 Hb_004116_180--Hb_033152_100 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080 Hb_005754_030--Hb_002986_070 Hb_007735_060 Hb_007735_060 Hb_005754_030--Hb_007735_060 Hb_002016_050 Hb_002016_050 Hb_005754_030--Hb_002016_050 Hb_015183_080 Hb_015183_080 Hb_005754_030--Hb_015183_080 Hb_007234_010 Hb_007234_010 Hb_005754_030--Hb_007234_010 Hb_000056_010 Hb_000056_010 Hb_024698_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_024698_010--Hb_003376_260 Hb_097646_010 Hb_097646_010 Hb_024698_010--Hb_097646_010 Hb_003001_040 Hb_003001_040 Hb_024698_010--Hb_003001_040 Hb_005048_140 Hb_005048_140 Hb_024698_010--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_024698_010--Hb_116420_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149372 0.866466 0.248964 0.687918 0.0921956 0.71131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0828047 0.228152 0.149962 0.67608

CAGE analysis